How to remove a chr from a bam file?
Hi.
If you want to remove reads mapped on a certain chr, how would you do that?
I know 'samtools' can extract reads on a chr. Extraction of each chr and combining chr data I want would solve the problem, but I have multiple bam files to run it.
So, if anyone of you know how to REMOVE a single chr (e.g. chr1 only), please tell me.
Thank you!
1 answer
See this post: Remove mitochondrial reads from BAM files
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Ram
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Ashutosh Pandey
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Ashutosh Pandey
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