- Picard's CollectRnaSeqMetrics (search for that word).
- RNA-SeQC is another
• 0 views
•
link
written
by
GenoMax
How do get additional bam statistics
I have multiple bam files and I'm looking for some statistics about them.
I know how to generate basic statistics using samtools flagstat but i want additional statistics like how many reads are mapped to transcripts, to introns, to intergenic regions, etc.
Can someone tell me a way do do that?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Number of secondary alignments per read
written by am3
-
mapping status for each region
written by a.hasankhani74 •
-
Extract the sequence of a gene from an aligned BAM file
written by rykerklie7 •
-
Summary from a vcf file
written by felipead66
-
mapping rate of small rna-seq with different references
written by woongjaej •
-
How to filter/view reads mapped to multiple locations using samtools or pysam
written by AlchemistMoz •
-
SAMTOOLS flagstat outputs
written by jt358 •
-
Differences between two SAM/BAM files with samtools
written by dshulgin
-
Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
written by Nick
-
Coverage Of Rnaseq: Exonic, Intronic And Intergenic
written by Pfs
