This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to visualize a list of genes on their chromosomal position?

If you go to Ensembl, I can see the location of a gene in the genome browser at various levels. One of these levels is the position on the full (schematic) chromosome. But if I have a list of genes and want to see their distribution over one or more chromosomes, is there a tool that can visualize this for me? I am happy to look up the positions myself, e.g. with the Ensembl SPARQL endpoint, and use that as input. But I still need some tool to plot these genes on nice graphical representation of chromosomes. What are my options?

genome

1 answer

Egon; did you see Drawing Chromosome Ideograms With Data ?

I guess I was not using the right search words...

Log in to answer this question.