How can I map the location of my gene of interest using syMAP?
I want to map the location of some gene families on a few plant genomes/ chromosomes. These genomes are not available in Ensembl.
1. How can I map the location of my gene of interest on chromosomes/ genomes of plant genomes/ chromosomes using syMAP?
2. what are the other tools?
1 answer
Ok.
I have gone through the manual and installed the software using the manual. What I want to know precisely is that
1. I have two genomes, but I want to highlight/ mark or show synteny for only a few genes on both the genomes. How can I selectively do this for say 5 genes?
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Your question is exceedingly broad, there is a manual on how to use the tool:
http://www.agcol.arizona.edu/software/symap/
read that then come back with specific questions.