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GO enrichment analysis on my own gene list

I have a list of genes which I am interested among 5 plant genomes. All of these genes are grouped to Gene Families based on gene pairwise comparison score( similarity score). the format is 

 #geneName       chr       GeneFamily_ID      start     end     genome_ID
...

I want to do GO enrichment analysis on that to get GO terms but I do not know how to create the input file for the GO analysis. besides some genomes is not in the standard model.

I plan to use the goatool from https://github.com/tanghaibao/goatools

I am totally new to use that so if you could give me any suggestion, I am appreciated

gene go enrichment analysis rna-seq
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updated by Antonio R. Franco Antonio R. Franco • written by qxu062 • qxu062

1 answer

Try this web service http://plantregmap.cbi.pku.edu.cn/go.php. It contains many databases for GO enrichment analysis.

You only need to select your specie and include the name of the genes to analyze. You can also download the databases

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written by Antonio R. Franco Antonio R. Franco

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