converting the format of read files in GEO datasets (SRA) to fasta and fatsq
1 answer
You can use SRAtools for this purpose. I think it is available for both Windows and Linux. Once installed, you can download/convert sra files to fastq as follows:
fastq-dump myfile.sra #for single end
fastq-dump --split-files myfile.sra #if paired end
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