This is a test version of Biostars. For the public version, visit https://www.biostars.org.
RNA-seq experiments, usually are made in parallel with the Ribosomal profiling experiments.

Hey guys,

In GSE35641 for ribo-seq, how I can differentiate RNA-seq experiments from Ribosomal profiling experiments? I mean I don't know which sra file is ribo-seq and which is RNA-seq.

May you tell me

rna-seq sequencing ribo-seq
• 2,285 views • link
updated by Ram Ram • written by zizigolu zizigolu

1 answer

You can actually get the complete information here

from arrayexpress,

E-GEOD-35641

you have all the possible info which you should have during the analysis

hth

• 0 views • link
updated by Ram Ram • written by Manvendra Singh Manvendra Singh

Thanks a lot,

I found GSM872399 is for total transcriptom but in sra accession the same is for footprint. Does this mean GSM872399 is the RNA-seq or ribo-seq?

• 0 views • link
updated by Ram Ram • written by zizigolu zizigolu

Sorry I read the proposed page but I got confused where is the RNA-seq accession because all telling about ribo-seq. May you tell me more please?

• 0 views • link
updated by Ram Ram • written by zizigolu zizigolu

Log in to answer this question.

More posts like this