2 answers
Most public Galaxy instances only provide a subset of tools. ribo-galaxy provides an option to upload files (I don't see an FTP option, but perhaps one has to create an account to see that), so you'll need to just upload fastq files. Note that uploading via a web browser will limit the file sizes you can use to ~2 gigs (thus my mention of ftp).
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written
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Devon Ryan
Those options are poorly named. The various types of "fastq" just denote the quality range. Anything made these days will be "sangerfastq", regardless of whether it's from an Illumina machine or ion torrent or something else.
It looks like you have an acceptable solution, but since you mentioned using SRA archives, I'm going to point out the SRA-tools Galaxy tools: https://github.com/mdshw5/sra-tools-galaxy. You might write to the maintainers of the Galaxy server you are using, since these tools might be more efficient (for both parties) than uploading fastq from your computer.
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Matt Shirley
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