This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Non-Coding Expressed Seq

Hi,

How can we find non-coding expressed sequence on whole genome sequences data? should I do the blastn?

Thanks Sara

non seq
• 2,512 views • link
updated by Niek De Klein Niek De Klein • written by User 8845 • User 8845

What do you mean "annotate" ? do you want a term from a controlled vocabulary ?

• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

Please take a moment to review your question again, provide us with a more compreshensive explaination of what you are trying to do and what kind of data you are dealing with. Also try to understand the question and your experimental setting yourself first, e.g. you most likely mean transcribed not 'expressed' which implies coding. If your question is really important to you you should take that time, otherwise it is maybe not relevant.

• 0 views • link
written by Michael Dondrup Michael Dondrup

1 answer

Blastx transcripts from for example RNA-seq against protein database. Once that don't have a hit are either unknown or non-coding.

• 1 views • link
written by Niek De Klein Niek De Klein

Be careful, you most likely cannot answer such a vague question correctly.

• 0 views • link
written by Michael Dondrup Michael Dondrup

Log in to answer this question.

More posts like this