Hi, I find this tool [https://github.com/kblin/ncbi-genome-download][1] in github for downloading the bacteria genomes. ncbi-genome-download bacteria it downloades ---> refseq/bacteria/GCF_940077525.1 from GCF_ * how do I …
I'm wanting to align some RNA-seq to mm10. I've read that you should align to the major release and not patch releases (https://www.biostars.org/p/342482/). However I …
I have download Saccharomyces cerevisiae (Yeast) genome and annotation from Ensembl R64-1-1. code as: featureCounts ./Saccharomyces_cerevisiae/Ensembl/R64-1-1/Annotation/Archives/archive-2015-07-17-14-36-40/Genes/genes.gtf -o genecounts_888 -t gene -p -g Name .exprnasamout/SRX3084888.bam There …
Hi I have a question about the differences between the FASTA files that can be downloaded from the ensembl ftp (ftp://ftp.ensembl.org/pub/release-75/fasta/homo_sapiens/dna/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa.gz) and the ncbi ftp …
I can only find the old version at the ftp server: ftp://ftp.ncbi.nih.gov/repository/OMIM/ARCHIVE/omim.txt.Z May I ask where is the latest version? Or we have to use …
<p>Hi,</p> <p>I'm interested in downloading some microbial transcirptome sequences for analysis, but I'm not sure which files in <a href="ftp://ftp.ncbi.nih.gov/refseq/release/microbial/">NCBI RefSeq release microbial</a> contain the …
<p>What are the differences between ensembl db releases for the same genome build?</p> <p>For example ensembl's current release is 63 for the current human genome …