Where to find archived NCBI taxonomy file

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6.0 years ago

jesselee516 ▴ 100

Hi all,

I am curious whether or not there is archived NCBI taxonomy lineage file(names.dmp and nodes.dmp). I know I can download the newest version from NCBI taxonomy. But I am interested in some old version. Because they updated that database quickly.

Assembly genome taxonomy metagenomic • 1.9k views

ADD COMMENT • link 6.0 years ago by jesselee516 ▴ 100

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There was NCBI-reform in 2014.

Here I saved an old version.

where can I get environmental bacteria genome in fasta format (as many as possible)?

Will it be helpful to you? I am not sure.

Look also here:

NCBI taxonomy ids in a file

But here the information you need is current.

Manipulating Ncbi Dumped Files

ADD REPLY • link 6.0 years ago by natasha.sernova ★ 4.0k

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Hi natasha,

Thanks for help. Sorry for not clearly ask my question. I am actually the historical lineage information(should be names.dmp and node.dmp files), like when some phylum, class, order, family, genus and species added into the database.

ADD REPLY • link 6.0 years ago by jesselee516 ▴ 100

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You should email NCBI Help desk and ask them about this. I don't think this information is likely to be available on NCBI web site.