This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Convert to Forward strand

Hi all, is it possible to convert all VCF data to forward strand? Is there a script that can do that?

Thanks again in advance.

vcf

The DP4 field under INFO contains the information for reads covering the strand for ref and alt bases. If you manipulate this field as per your requirement, you can get it.

Plz elaborate your question, so that we write the code for it.

0 answers

No answers yet.

Log in to answer this question.