Hello I am trying to install CNVnator on HPC cluster but facing some problem. Root and samtools are already installed but I couldn't install CNVnator. …

Hello, I have two **GTF files** which contain the information of **transcripts**, and I want to **get the overlap of transcripts between the two GTF …

Hello all, Can anyone please suggest the best open source CNV calling tool that is available, having a decent specificty and sensitivity. I am using …

Dear all, I would like to get an annotation file (which is in gtf or bed format) for a list of genes. And this annotation …

Now I have RNA-seq data of a non-model animal. Can anyone tell me how to get transcript annotation in GTF format? Use cufflinks? Thanks in …

<p>Hi Users,</p> <p>Can anyone suggest what is the application of Hi-C?</p> <p>How it is useful?</p> <p>In what kind of research work will it be useful?</p> …

I have written a small R script to generate a plot for my work. I need to add a track below it. Can anyone suggest …

I have multiple transposons start and end positions in a chromosome. I want to plot it. I want it without using any bioconductor packages. Can …

<p>I was just wondering what is the best method to calculate polyphen scores from bovine sequence data? Polyphen only handles human nsSNPs, so must I …

<p>Hi all,</p> <p>I want to extract the genomic region of 3'UTR and 5'UTR from the GENCODE gtf annotation file to make a bed file for …