How to read the GATK BaseRecalibration report

Hi everyone,

I use GATK to do SNP call.But the BaseRecalibration report confused me. what is reported quality scores and the empirical quality. what is the difference between them?

Thanks!

gatk baserecalibration

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updated 4.8 years ago by Ram

• written 12.1 years ago by stephenn •

http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_bqsr_BaseRecalibrator.html

http://gatkforums.broadinstitute.org/discussion/44/base-quality-score-recalibration-bqsr

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written 12.1 years ago by Ashutosh Pandey

0 answers

No answers yet.

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