Entering edit mode
7.3 years ago
agata88
▴
870
Hi all!
I would like to ask what is the scale of genotype quality?
I've red that GATK still annotate variants with GQ 1-99. I have results from VarScan which shows me GQ from 1-255.
I am little confused, Is variant with GQ 255 as quality high as with 99? How about variant with GQ = 60 (1-255) and 60 (1-99)?
What is the difference between those two?
Thanks in advance,
Best,
Agata