GATK BaseRecalibration report
hi everyone
I use GATK to do snp call. But I don't understand the BaseRecalibration report as follows . And I really don't known the word 'Observations' 'Errors' stand for.
Thanks in advance
RaedGroup R11 R11 R11
EventType M I D
EmpiricalQuality 15.0 28.0 26.0
EstimatedQReported 32 45 45
Observations 1.23e+08 1.23e+08 1.23e+08
Errors 4.35e+06 2.15E+05 4.28e+05
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me to :(
i really don't known the word 'Observations' 'Errors' stand for.
Thanks in advance
RaedGroup R11 R11 R11
EventType M I D
EmpiricalQuality 15.0 28.0 26.0
EstimatedQReported 32 45 45
Observations 1.23e+08 1.23e+08 1.23e+08
Errors 4.35e+06 2.15E+05 4.28e+05
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Observational error (or measurement error) is the difference between a measured value of quantity and its true value. In statistics, an error is not a "mistake". Variability is an inherent part of things being measured and of the measurement process.
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