Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
0
votes
1
reply
1.3k
views
What are the industry-leading methods of benchmarking metagenomics taxonomy identification?
metagenomics taxonomy
updated 17 months ago by • 0 • written 6.0 years ago by ▴ 980
4
votes
5
replies
4.7k
views
What is the expected rate of SNPs within a human exome sequencing with HiSeq?
SNP exome highseq
updated 6.3 years ago by ★ 2.0k • written 8.1 years ago by ▴ 980
27
votes
4
replies
24k
views
Converting Gff/Gtf + Reference To Embl Or Genbank ...Any Tools Available?
gff genbank
updated 7.6 years ago by • 0 • written 11.0 years ago by ▴ 980
25
votes
10
replies
17k
views
6 follow
How To Batch Grab All Ko (Kegg Ontology) Terms Associated With Each Kegg Pathway?
kegg pathway
updated 21 months ago by 43k • written 10.7 years ago by ▴ 980
0
votes
3
replies
2.2k
views
Nextseq 500 sample exome data
nextseq exome
updated 21 months ago by 43k • written 8.3 years ago by ▴ 980
2
votes
2
replies
3.5k
views
Software For Determining Pathway Differential Expression For Annotated Ngs Data?
pathway ngs differential expression
updated 8.0 years ago by ▴ 130 • written 10.7 years ago by ▴ 980
4
votes
4
replies
10k
views
Kegg Id Vs Cog Id, And The Best Method For Large Batch Id Assignment?
kegg annotation pathway
updated 2.9 years ago by ▴ 160 • written 10.9 years ago by ▴ 980
6
votes
4
replies
4.3k
views
Correcting batch effects between RPKM datasets?
DGE RNA-Seq batch RPKM
updated 18 months ago by 43k • written 8.8 years ago by ▴ 980
2
votes
2
replies
2.9k
views
Are there any software packages available to calculate ploidy from RNA-Seq data?
RNA-Seq CNV ploidy
updated 18 months ago by 43k • written 8.8 years ago by ▴ 980
0
votes
7
replies
4.8k
views
What is a microarray "signature" and how can I compare my sample to a known signature?
microarray NGS chip
updated 18 months ago by 43k • written 8.8 years ago by ▴ 980
5
votes
12
replies
4.8k
views
How to cluster microarray samples based on euclidean distance and a complete linkage metric?
microarray clustering DGE
updated 17 months ago by 43k • written 8.8 years ago by ▴ 980
5
votes
11
replies
3.6k
views
How to calculate differential gene expression from single sample on Affy GeneChip?
microarray genechip affy
updated 17 months ago by 43k • written 8.8 years ago by ▴ 980
2
votes
2
replies
2.5k
views
How Can I Perform Multiple Local Alignments In Jalview?
jalview
updated 16 months ago by 43k • written 10.6 years ago by ▴ 980
12
votes
5
replies
6.9k
views
Are There Any Scripts That Make Images From Gff Files?
gff
updated 10.1 years ago by 104k • written 10.1 years ago by ▴ 980
0
votes
4
replies
3.4k
views
What Software Can Be Used To Attempt To Improve An Assembly By Filling Targeted Gaps Or Premature Contigs Endings?
assembly ngs
updated 10.3 years ago by 20 • written 10.4 years ago by ▴ 980
3
votes
5
replies
3.9k
views
Vanilla Local Galaxy Installation Is Giving Error: "No Module Called Eggs"
galaxy python
updated 10.4 years ago by ▴ 10 • written 10.4 years ago by ▴ 980
4
votes
5
replies
5.3k
views
Need A Unix Script For The Galaxy Tool: Maf To Fasta (Version 1.0.1)
maf galaxy
updated 10.4 years ago by 161k • written 10.4 years ago by ▴ 980
3
votes
1
reply
5.0k
views
Snp Detection In Viruses: Does A Haploid Caller Like Freebayes Need To Be Used Instead Of Something Like Samtools/Bcftools?
variant-calling snp
updated 10.4 years ago by ★ 2.5k • written 10.4 years ago by ▴ 980
4
votes
3
replies
2.0k
views
Need Suggestions For A Greedy Algorithm For Thoroughly Assembling Very Short Reads
assembly
updated 10.6 years ago by ▴ 980 • written 10.6 years ago by ▴ 980
54
votes
22
replies
16k
views
10 follow
Sequencing Your Own Genome! How Can It Be Done? Has Anyone Here Done It?
human
updated 10.6 years ago by ▴ 270 • written 10.6 years ago by ▴ 980
10
votes
4
replies
8.1k
views
Is It Necessary To Remove Adapters In All Orientations When Preprocessing Ngs Data?
trimming filtering ngs
updated 10.6 years ago by 4.1k • written 10.6 years ago by ▴ 980
2
votes
3
replies
5.3k
views
B2G4Pipe (Command-Line Blast2Go) Question About Output / Throughput
annotation go
updated 10.7 years ago by ▴ 670 • written 10.7 years ago by ▴ 980
0
votes
1
reply
3.4k
views
Getting Pe-Read Strand Info From A Sam File Made With Tophat And Stranded Library?
sam tophat strand
updated 10.7 years ago by 104k • written 10.7 years ago by ▴ 980
16
votes
7
replies
12k
views
How Are Paired-End Read Insert Sizes Inferred For Reporting In A Sam File?
mapping ngs
updated 10.7 years ago by 12k • written 10.7 years ago by ▴ 980
0
votes
2
replies
6.0k
views
How To Determine Pcr Duplicate/Redundant Reads In Ngs Data?
pcr duplicates qc
updated 10.7 years ago by 100k • written 10.8 years ago by ▴ 980
4
votes
5
replies
6.4k
views
How To Get Gene Ontology Ids (Go) By Using Gis?
go gene-ontology
updated 10.8 years ago by ★ 1.5k • written 10.8 years ago by ▴ 980
1
vote
1
reply
9.8k
views
Go Term Hierarchy -- How To Find All Children Terms From A Parent Term?
go gene-ontology
updated 11.0 years ago by 161k • written 11.0 years ago by ▴ 980
7
votes
7
replies
6.1k
views
Go Terms -- Is It Normal To Have Multiple Go Terms Associated With A Specific Gene/Locus?
gene-ontology gene
updated 11.0 years ago by ▴ 740 • written 11.0 years ago by ▴ 980
10
votes
6
replies
6.4k
views
Automated Microbial Gene Prediction From Assembled Genomes -- What Is The Latest, Most Accurate Software?
assembly training
11.0 years ago by JacobS ▴ 980
1
vote
0
replies
1.7k
views
Combiners For Prokarytes -- Need Recommendations For Getting Consensus Genes From Multiple Prediction Methods
updated 11.0 years ago by 49k • written 11.0 years ago by ▴ 980
1
vote
2
replies
2.9k
views
Jigsaw Gene Prediction Combiner - Use For Prokaryotes?!
11.0 years ago by JacobS ▴ 980
31 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6