I have a question regarding gene-ontology term relatedness. Say I have a GO term like GO:0044238, which signifies "Primary Metabolic Process." How can I pull all GO terms that are children of this term? If I use tree view, I can see this view:
Primary metabolic process: - cellular amino acid metabolic process - TCA cycle - protein metabolic process
...and beneath protein metabolic process are the following: - proteolysis - lipoprotein metabolism
I want to mine every GO term that is a child of Primary metabolic process at every level. Thanks for any suggestions!
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written
by
JacobS
1 answer
using GO-mysql , see http://wiki.geneontology.org/index.php/Example_Queries#Find_descendants_of_the_node_.27nucleus.27
see also A grep for Gene Ontology ?
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