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questions
0
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replies
326
views
Long or short read sequencing for differential isoform analysis?
pacbio
17 months ago by
A. Domingues
★ 2.7k
2
votes
1
reply
1.1k
views
How were CCLE SNPs annotated?
annotation
CCLE
SNP
2.8 years ago by
A. Domingues
★ 2.7k
3
votes
11
replies
1.8k
views
How to construct an anova to test diferences bewteen conditions taking into account gene expression variability?
Anova
statistics
3.4 years ago by
A. Domingues
★ 2.7k
2
votes
1
reply
1.5k
views
How to test gene expression variability - expression differences independent of genotype
RNA-Seq
DESeq2
gene expression
3.4 years ago by
A. Domingues
★ 2.7k
4
votes
4
replies
1.9k
views
Integrate single-cell datasets (TPM and raw) to find gene markers between clusters
single-cell
SC
Seurat
updated 3.5 years ago by
Biostar
20 • written 3.5 years ago by
A. Domingues
★ 2.7k
0
votes
2
replies
945
views
Calculate strand ratio for repeat (ALU) elements
ALU
RepeatMasker
STAR
Transposons
3.5 years ago by
A. Domingues
★ 2.7k
11
votes
8
replies
1.8k
views
FDR for multiple contrasts
fdr
p.adjust
proteomics
updated 3.6 years ago by
dariober
14k • written 3.6 years ago by
A. Domingues
★ 2.7k
9
votes
9
replies
2.7k
views
Detecting expression in intergenic regions
RNA-Seq
Bedtools
genome
4.2 years ago by
A. Domingues
★ 2.7k
11
votes
4
replies
13k
views
Issue with naming convention in bedtools
SAM
bedtools
updated 16 months ago by
Ram
43k • written 9.1 years ago by
A. Domingues
★ 2.7k
4
votes
3
replies
1.1k
views
Compare expression (coverage) of a set of genomic regions vs background
coverage
expression
RNA-Seq
4.5 years ago by
A. Domingues
★ 2.7k
12
votes
6
replies
9.9k
views
MutSigCV output and coMut plots
MutSigCV
CoMut-plot
Variants
SNP
updated 17 months ago by
Ram
43k • written 9.8 years ago by
A. Domingues
★ 2.7k
7
votes
10
replies
3.8k
views
How to identify consecutive (adjacent) genomic intervals
genomic-intervals
bed
updated 22 months ago by
Ram
43k • written 8.2 years ago by
A. Domingues
★ 2.7k
1
vote
4
replies
1.2k
views
How to find Overlapping coordinates on their 3' or 5'?
bed
bedtools
intersection
genomic coordinates
updated 7.2 years ago by
Pierre Lindenbaum
161k • written 7.2 years ago by
A. Domingues
★ 2.7k
3
votes
3
replies
2.3k
views
Retrieve tissue expression in Zfin (R/python)
Danio-rerio
Zfin
zebrafish
updated 22 months ago by
Ram
43k • written 8.3 years ago by
A. Domingues
★ 2.7k
2
votes
2
replies
3.7k
views
rRNA quantification: which is the best way?
rRNA
mapping
featureCounts
updated 7.9 years ago by
Charles Plessy
★ 2.9k • written 7.9 years ago by
A. Domingues
★ 2.7k
6
votes
3
replies
5.5k
views
Mapping to the transcriptome using Bowtie - am I doing it right?
bowtie
gtf
transcriptome
zebrafish
RNA-Seq
updated 8.2 years ago by
mastal511
★ 2.1k • written 8.2 years ago by
A. Domingues
★ 2.7k
2
votes
4
replies
4.4k
views
How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
tophat
tomoseq
cuffcompare
cuffmerge
cufflinks
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
A. Domingues
★ 2.7k
2
votes
2
replies
3.2k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
bioconductor
uniprot
ensembl
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
A. Domingues
★ 2.7k
16
votes
9
replies
11k
views
6 follow
problems with MAF for MutSigCV (vcf2maf)
vcf2maf
snp
vcf
MutSigCV
gatk
updated 11 months ago by
RAJDEEP
• 0 • written 9.8 years ago by
A. Domingues
★ 2.7k
5
votes
15
replies
3.7k
views
Custom database for genomic data
ChIP-Seq
Database
RNA-Seq
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
A. Domingues
★ 2.7k
2
votes
2
replies
2.2k
views
"mask" values in a bedgraph
bigwig
conservation
bedtools
bedgraph
updated 2.6 years ago by
Ram
43k • written 9.9 years ago by
A. Domingues
★ 2.7k
0
votes
2
replies
2.5k
views
Cuflinks -Compare Paired Reads With Single Ended Reads
cufflinks
cuffdiff
updated 10.0 years ago by
Biostar
20 • written 11.8 years ago by
A. Domingues
★ 2.7k
18
votes
6
replies
13k
views
6 follow
Heatmap Of Read Coverage Around Tsss
heatmap
coverage
bedtools
updated 10.7 years ago by
Ying W
★ 4.2k • written 10.8 years ago by
A. Domingues
★ 2.7k
0
votes
0
replies
4.4k
views
How To Create A Gff3 File With Introns For Miso
intron
gff3
11.6 years ago by
A. Domingues
★ 2.7k
24 results • Page
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