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0
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0
replies
276
views
TSS Enrichment error in Signac
Signac scRNA-ATAC ensdb
11 weeks ago by kousi31 ▴ 100
2
votes
1
reply
335
views
How to solve unloadNamespace(package) : namespace in R
R
updated 11 weeks ago by 43k • written 11 weeks ago by ▴ 100
1
vote
2
replies
263
views
How to use gsub inside mapply to assign names to Seurat objects
scATAC-seq seurat
updated 11 weeks ago by 43k • written 11 weeks ago by ▴ 100
0
votes
7
replies
551
views
Iterate through Seurat object to add patient information
R Seurat
updated 3 months ago by 43k • written 3 months ago by ▴ 100
2
votes
1
reply
327
views
will the features.tsv file from 10X chromium be same for all donor individuals?
scRNA-seq chromium 10x single-cell
updated 3 months ago by 43k • written 3 months ago by ▴ 100
0
votes
1
reply
1.3k
views
cytoscape: Network Analyser error - Network interpretation null
software error cytoscape
updated 3.6 years ago by ▴ 50 • written 3.9 years ago by ▴ 100
4
votes
12
replies
5.3k
views
Salmon installation error
software error
updated 3.7 years ago by • 0 • written 5.0 years ago by ▴ 100
7
votes
4
replies
2.8k
views
How to make box plot for different gene types
R Box plot RNA-Seq
updated 2.2 years ago by 21k • written 3.8 years ago by ▴ 100
0
votes
2
replies
1.2k
views
Extracting features corresponding to low entropy regions from RNAfold output
RNAfold RNA secondary structure
updated 3.8 years ago by ▴ 230 • written 3.8 years ago by ▴ 100
0
votes
3
replies
2.7k
views
ChromoMap Error in 1:nrow(temp.df) : argument of length 0
R chromoMap software error
3.8 years ago by kousi31 ▴ 100
2
votes
4
replies
1.3k
views
Specifying unequal replicates in deseq2 with htseq-count input
DEseq2 RNA-Seq DE analysis
3.8 years ago by kousi31 ▴ 100
2
votes
1
reply
998
views
Enhanced volcano plot - Over-ride colouring scheme with custom key-value pairs for both log2FC and p value
enhanced volcano plot software R deseq2
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 100
1
vote
8
replies
1.7k
views
Error while running CPAT
software error
3.8 years ago by kousi31 ▴ 100
0
votes
3
replies
1.9k
views
How to prepare ranked-gene list for statistical enrichment test in PANTHER database
panther ranked-gene-list pathway-enrichment
3.9 years ago by kousi31 ▴ 100
6
votes
3
replies
5.1k
views
How to select multiple nodes with mouse - left click and drag
cytoscape software
updated 9 weeks ago by • 0 • written 3.9 years ago by ▴ 100
3
votes
2
replies
1.2k
views
Merged vs. Ensembl GTF for htseq-count
RNA-Seq htseq-count
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by ▴ 100
2
votes
3
replies
1.7k
views
How to use output of PANTHER Enrichment Test as input to cytoscape
panther cytoscape
3.9 years ago by kousi31 ▴ 100
0
votes
1
reply
1.6k
views
KEGG database for GSEA
GSEA kegg RNA-Seq enrichment-pathway analysis
3.9 years ago by kousi31 ▴ 100
1
vote
3
replies
2.4k
views
How to feed the sequence dictionary created with multifasta file into python function
python multi-fasta function
updated 4.0 years ago by ▴ 600 • written 4.0 years ago by ▴ 100
0
votes
0
replies
613
views
Do anyone know how to interpret Graphclust ouput files?
Graphclust RNA secondary structure
4.6 years ago by kousi31 ▴ 100
1
vote
3
replies
1.6k
views
Installation error - RNAPLEX
software error RNAplex makefile
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 100
8
votes
13
replies
4.3k
views
8 follow
Doubt - installing LncTar software
software installation Lnctar perl
updated 11 months ago by • 0 • written 4.7 years ago by ▴ 100
0
votes
2
replies
1.2k
views
Which axis to look for in PCA plot to understand the sample clustering
PCA RNA-Seq QC clustering
updated 4.7 years ago by 14k • written 4.7 years ago by ▴ 100
0
votes
1
reply
690
views
FIRE installation error
software error
4.7 years ago by kousi31 ▴ 100
0
votes
3
replies
1.3k
views
How to obtain multiple sequence alignments of genomes of selected vertebrate species?
multiple-sequence-alignment
updated 11 months ago by 43k • written 4.8 years ago by ▴ 100
0
votes
6
replies
2.4k
views
stringtie2 error : ./samtools-0.1.18/bgzf.h:29:10: fatal error: zlib.h: No such file or directory
software error stringtie2
4.8 years ago by kousi31 ▴ 100
4
votes
10
replies
3.7k
views
How to quantify gene expression when stringtie considers two adjacent genes as single gene?
stringtie deseq2 RNA-Seq htseq DE
4.8 years ago by kousi31 ▴ 100
0
votes
0
replies
954
views
What does the read counts in IGV indicate?
RNA-Seq Read-Counts Lncrna
4.8 years ago by kousi31 ▴ 100
6
votes
2
replies
4.4k
views
How to obtain transcript level TPM using stringtie?
RNA-Seq stringtie
updated 4.9 years ago by ▴ 40 • written 4.9 years ago by ▴ 100
0
votes
0
replies
759
views
which hmm file to use from Gene 3D database
Database RNA-Seq
4.9 years ago by kousi31 ▴ 100
0
votes
1
reply
1.7k
views
A doubt in 10X chromium linked reads
sequencing genome
5.0 years ago by kousi31 ▴ 100
1
vote
13
replies
3.7k
views
Ambiguous reads in htseq-count
RNA-Seq htseq-count
5.0 years ago by kousi31 ▴ 100
0
votes
3
replies
2.2k
views
which feature type and id attribute to use in ht-seq count
RNA-Seq
5.1 years ago by kousi31 ▴ 100
0
votes
5
replies
1.9k
views
How to extract fasta sequence of lncRNA from whole ncRNA fasta of ucsc ftp download?
sequence
5.1 years ago by kousi31 ▴ 100
1
vote
3
replies
5.3k
views
SRA prefetch error
software error
updated 5.4 years ago by ▴ 260 • written 5.4 years ago by ▴ 100
35 results • Page 1 of 1
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