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questions
0
votes
0
replies
314
views
RRBS fastq - biased per base sequence content
fastqc
rrbs
11 months ago by
mbk0asis
▴ 690
1
vote
2
replies
1.4k
views
WGCNA - consensus analysis - cutreeStatic - no samples selected
RNA-Seq
WGCNA
updated 21 months ago by
annamariabugaj
• 0 • written 3.8 years ago by
mbk0asis
▴ 690
0
votes
1
reply
2.2k
views
WGCNA blockwiseConsensusModules : number of colors and objects in dendrogram don't match
wgcna
blockwiseConsensusModules
updated 23 months ago by
machado.rodrigo
• 0 • written 4.4 years ago by
mbk0asis
▴ 690
0
votes
1
reply
913
views
Seurat - LoadLoom Error: missing values are not allowed in subscripted assignments of data frames
loom
Seurat
updated 10 months ago by
benjamin.pyenson
• 0 • written 2.5 years ago by
mbk0asis
▴ 690
4
votes
2
replies
845
views
DESeq2: impact of number of expressed genes in differential expression analysis
genes
number
of
DESeq2
expressed
2.8 years ago by
mbk0asis
▴ 690
6
votes
6
replies
1.1k
views
Divide by a specified member in a group in R
R
dplyr
updated 2.9 years ago by
Dunois
★ 2.5k • written 2.9 years ago by
mbk0asis
▴ 690
0
votes
2
replies
2.4k
views
FindIntegrationAnchors returs 0 anchor after filtering
seurat
dataintegration
FindIntegrationAnchors
3.1 years ago by
mbk0asis
▴ 690
0
votes
3
replies
832
views
how to create mutant DNA sequence
mutation
in silico mutagenesis
3.4 years ago by
mbk0asis
▴ 690
4
votes
2
replies
926
views
GSVA example leukemia returns a 'NULL' object
gsva
RNA-Seq
updated 3.7 years ago by
Kevin Blighe
87k • written 3.7 years ago by
mbk0asis
▴ 690
0
votes
2
replies
1.8k
views
Seurat3 DimPlot inconsistency
RNA-Seq
Seurat
Seurat3
3.8 years ago by
mbk0asis
▴ 690
3
votes
8
replies
1.4k
views
Odd DESeq2 results
RNA-Seq
DESeq2
3.8 years ago by
mbk0asis
▴ 690
7
votes
3
replies
1.2k
views
biomaRt::getSequence - Invalid type argument
biomaRt
R
updated 17 days ago by
Ram
43k • written 3.9 years ago by
mbk0asis
▴ 690
5
votes
5
replies
2.6k
views
<DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
DESeq
3.9 years ago by
mbk0asis
▴ 690
3
votes
4
replies
2.7k
views
deepTools : No module named cycler
deepTools
python cycler
3.9 years ago by
mbk0asis
▴ 690
1
vote
7
replies
5.2k
views
plotProfile (deepTools) generated a peak on gene body region
deepTools
plotProfile
updated 4.0 years ago by
Shaurya Jauhari
▴ 50 • written 6.4 years ago by
mbk0asis
▴ 690
3
votes
3
replies
3.5k
views
mapIDs (AnnotationDBi) returns shorter list of IDs than input IDs
AnnotationDBi
mapIDs
R
AnnotationDBI
4.1 years ago by
mbk0asis
▴ 690
5
votes
4
replies
1.5k
views
Normalizing NGS samples expected to have different total reads
NGS
Normalization
4.3 years ago by
mbk0asis
▴ 690
11
votes
3
replies
3.7k
views
fGSEA result to csv
fGSEA
RNA-Seq
GSEA
updated 4.4 years ago by
alserg
▴ 930 • written 4.4 years ago by
mbk0asis
▴ 690
1
vote
2
replies
1.8k
views
View gene list in GAGE enriched terms
gage
gsea
gene ontology
updated 5.0 years ago by
giderk
• 0 • written 6.0 years ago by
mbk0asis
▴ 690
1
vote
3
replies
2.2k
views
How can I access the consensus sequences of all human ERVs from Dfam?
dfam
erv
updated 5.2 years ago by
mlbendall
▴ 240 • written 6.1 years ago by
mbk0asis
▴ 690
2
votes
4
replies
1.0k
views
1000 genome project - difference between "0" and "0|0"
1000 genome project
genotype
vcf
updated 5.7 years ago by
Santosh Anand
5.7k • written 5.7 years ago by
mbk0asis
▴ 690
0
votes
0
replies
1.2k
views
Meaning of mfold upper limit?
mfold
macs2
ChIP-Seq
5.7 years ago by
mbk0asis
▴ 690
1
vote
1
reply
1.9k
views
how to interpret imputed/phased VCF?
vcf
imputed
phased
5.8 years ago by
mbk0asis
▴ 690
3
votes
2
replies
2.8k
views
deepTools - change line colors in profile plots above a heatmap
deeptools
profile plot
heatmap
updated 5.8 years ago by
Devon Ryan
104k • written 5.8 years ago by
mbk0asis
▴ 690
0
votes
1
reply
1.1k
views
Can I combine sessions saved in UCSC genome browser?
UCSC genome browser
sessions
5.9 years ago by
mbk0asis
▴ 690
0
votes
3
replies
1.8k
views
Repeat names with "dup" at the end in repeatMasker GTF (UCSC) file?
repeatMasker
UCSC
updated 6.1 years ago by
genecats.ucsc
▴ 580 • written 6.1 years ago by
mbk0asis
▴ 690
0
votes
0
replies
730
views
CpG distribution in reads with variable length
pattern count
variable length
6.2 years ago by
mbk0asis
▴ 690
0
votes
0
replies
1.1k
views
Repetitive region expression in TCGA RNA-seq data?
TCGA
repetitive regions
6.3 years ago by
mbk0asis
▴ 690
0
votes
0
replies
1.4k
views
Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
TCGA
CNV
copy number
6.4 years ago by
mbk0asis
▴ 690
2
votes
3
replies
3.8k
views
How to calculate polygenic hazard score (PHS)?
plygenic hazard score
Alzheimer
statistics
updated 6.4 years ago by
jorma.o.jormakka
• 0 • written 7.1 years ago by
mbk0asis
▴ 690
0
votes
1
reply
1.0k
views
Extraction of every n-th and m-th columns
bash
command
updated 6.5 years ago by
Alex Reynolds
35k • written 6.5 years ago by
mbk0asis
▴ 690
22
votes
16
replies
16k
views
9 follow
fasta - reverse complement sequence
fasta
reverse complement
bash
updated 6.6 years ago by
dugong
• 0 • written 8.0 years ago by
mbk0asis
▴ 690
7
votes
2
replies
2.2k
views
save plots in for loop
R
for loop
jpeg
grep
6.9 years ago by
mbk0asis
▴ 690
0
votes
3
replies
3.7k
views
coxph error : missing value where TRUE/FALSE needed
survival analysis
coxph
updated 7.0 years ago by
Santosh Anand
5.7k • written 7.0 years ago by
mbk0asis
▴ 690
0
votes
0
replies
1.2k
views
How to predict onset age using polygenic hazard score?
polygenic hazard score
Alzheimer
7.0 years ago by
mbk0asis
▴ 690
0
votes
0
replies
2.3k
views
TCGAbiolinks - GDCdownload error
TCGAbiolinks
R
updated 13 months ago by
Ram
43k • written 7.1 years ago by
mbk0asis
▴ 690
11
votes
7
replies
4.9k
views
deepTools cluster information?
deepTools
kmeans
clustering
updated 7.2 years ago by
Devon Ryan
104k • written 7.2 years ago by
mbk0asis
▴ 690
0
votes
3
replies
1.7k
views
intersectBed - multiple intersections
bedtools
intersectBed
updated 7.4 years ago by
sysbiocoder
▴ 180 • written 7.4 years ago by
mbk0asis
▴ 690
10
votes
5
replies
1.7k
views
Inserting delim between numbers and strings in bash
bash
updated 7.4 years ago by
j_susat
▴ 40 • written 7.4 years ago by
mbk0asis
▴ 690
2
votes
1
reply
1.9k
views
Allele specific expression (ASE) using unfiltered reads from RNA-seq data?
RNA-Seq
allele-specific-expression
ASE
updated 7.4 years ago by
Biostar
20 • written 7.8 years ago by
mbk0asis
▴ 690
1
vote
2
replies
2.3k
views
Normalization necessary for TCGA 450K data?
450K
normalization
updated 7.6 years ago by
igor
13k • written 7.6 years ago by
mbk0asis
▴ 690
4
votes
9
replies
2.2k
views
How to split numbers and strings?
split
updated 21 months ago by
Ram
43k • written 8.3 years ago by
mbk0asis
▴ 690
5
votes
4
replies
3.1k
views
GAGE - eg2sym (ID conversion)
GAGE
RNA-Seq
GSEA
KEGG
updated 7.7 years ago by
Guangchuang Yu
★ 2.6k • written 7.7 years ago by
mbk0asis
▴ 690
4
votes
2
replies
2.0k
views
Where can I get bovine 'kegg.gs' in R?
kegg.gs
bovine
RNA-Seq
updated 7.9 years ago by
EagleEye
7.5k • written 7.9 years ago by
mbk0asis
▴ 690
5
votes
5
replies
3.5k
views
awk : if length to a pattern at column 2 is less than 5
awk
regex
updated 8.0 years ago by
Jorge Amigo
14k • written 8.0 years ago by
mbk0asis
▴ 690
4
votes
4
replies
2.1k
views
new line to tab in every second column
linux
bash
updated 8.0 years ago by
5heikki
11k • written 8.0 years ago by
mbk0asis
▴ 690
23
votes
2
replies
9.7k
views
1/2 in VCF genotype field?
vcf
zygosity
updated 8.1 years ago by
Jorge Amigo
14k • written 8.1 years ago by
mbk0asis
▴ 690
8
votes
5
replies
7.5k
views
how to substitue Nth character in a string using linux commands
linux
commands
updated 8.1 years ago by
Daniel
★ 4.0k • written 8.1 years ago by
mbk0asis
▴ 690
3
votes
6
replies
12k
views
overlapping texts (plot.PCA in FactoMineR)
R
factominer
8.2 years ago by
mbk0asis
▴ 690
3
votes
3
replies
2.9k
views
How to find out the mismatch position from MUSCLE or CLUSTALW output?
muscle
mismatch-finding
updated 21 months ago by
Ram
43k • written 8.4 years ago by
mbk0asis
▴ 690
63 results • Page
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