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Answer: A: In which subject MATLAB excel than other open source bioinformatics tools?
9.4 years ago by 14134125465346445 ★ 3.6k
7
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3
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2.5k
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Forum: Is Bioinformatics a creative field/industry?
bioinformatics
updated 13 months ago by 43k • written 9.4 years ago by ★ 3.6k
4
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1
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18k
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Answer: Answer: Pros and cons of Illumina HiSeq and Next Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 3.6k
0
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0
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18k
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Comment: C: Pros and cons of Illumina HiSeq and Next Seq
9.4 years ago by 14134125465346445 ★ 3.6k
1
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2
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1.9k
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Limits of bcf POS field uint32_t?
vcf bcf
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 3.6k
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0
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3.8k
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Comment: C: BWA or SMALT mapping algorithm
9.5 years ago by 14134125465346445 ★ 3.6k
0
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2
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9.7k
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Forum: Secondary Structure Prediction software RNA/DNA
dna secondary-structure software rna
updated 13 months ago by 43k • written 9.5 years ago by ★ 3.6k
1
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3
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2.3k
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trio, quad and bigger for rare disease WGS
wgs trios
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 3.6k
1
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0
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9.8k
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Comment: C: list of dockerized bioinformatics apps
9.5 years ago by 14134125465346445 ★ 3.6k
0
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0
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7.2k
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Comment: C: Denovo Assembly Of Paired And Mate Paired Reads
9.5 years ago by 14134125465346445 ★ 3.6k
1
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0
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4.4k
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Answer: Answer: Mate Pairs Contaminated With Single And Paired End?
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 3.6k
5
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1
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3.4k
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Answer: Answer: Mate pair Illumina reads - recommended mapper of choice, adapter removal and PE
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 3.6k
0
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0
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3.0k
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Comment: Comment: Price per gigabase pair of different sequencing platforms
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 3.6k
3
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2
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3.0k
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Price per gigabase pair of different sequencing platforms
next-gen
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 3.6k
1
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0
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3.1k
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Answer: Answer: programmatic fast search of 100-1000 short reads to a public server and obtain l
updated 2.3 years ago by 43k • written 9.5 years ago by ★ 3.6k
4
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6
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3.1k
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programmatic fast search of 100-1000 short reads to a public server and obtain list of nearby genes
blat
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.6k
11
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2
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1.7k
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Forum: Benchmark toolkits for Diploid Variant Calling
variant-calling benchmarking
updated 2.3 years ago by 43k • written 9.5 years ago by ★ 3.6k
3
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4
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2.3k
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Analysis tools to compare two similar Illumina targeted sequencing runs?
bam analysis targeted
updated 3.1 years ago by 43k • written 9.6 years ago by ★ 3.6k
3
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1
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2.3k
views
Any tools to count kmers in tumor/normal (contrast) pairs of samples?
next-gen kmer
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.6k
0
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1
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4.6k
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Comment: C: Open Source Variant Caller comparable to GATK Haplotype Caller?
9.6 years ago by 14134125465346445 ★ 3.6k
0
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0
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3.1k
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Comment: Comment: programmatic fast search of 100-1000 short reads to a public server and obtain l
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.6k
6
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13
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6.4k
views
bam file filter by TLEN and output as fastq
bam fastq samtools
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.6k
0
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2
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6.4k
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Comment: C: bam file filter by TLEN and output as fastq
9.6 years ago by 14134125465346445 ★ 3.6k
0
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2
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6.4k
views
Comment: Comment: bam file filter by TLEN and output as fastq
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.6k
0
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0
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2.1k
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Comment: C: fetch fully unaligned pairs and pairs with one unaligned read with samtools view
9.6 years ago by 14134125465346445 ★ 3.6k
1
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0
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6.4k
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Answer: Answer: problem while Installing BCFtools/htslib
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.6k
2
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1
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2.3k
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is there a special way to encode homopolymer indels in vcf format?
vcf
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.6k
2
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3
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1.9k
views
edit read alignments in bam region
bam alignment
updated 2.5 years ago by 43k • written 10.0 years ago by ★ 3.6k
5
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1
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3.5k
views
What is the convention for CNV vcf output in chromosome X and Y?
cnv vcf
updated 9.9 years ago by 3.5k • written 9.9 years ago by ★ 3.6k
9
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4
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4.6k
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Alternatives To Newbler To Assemble Ion Torrent Reads?
assembly ion-torrent
updated 9.9 years ago by 13k • written 11.0 years ago by ★ 3.6k
0
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0
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17k
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Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
10.0 years ago by 14134125465346445 ★ 3.6k
5
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2
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2.2k
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Answer: A: Comparison of NGS-Platform Manufacturers
10.0 years ago by 14134125465346445 ★ 3.6k
0
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1
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1.9k
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Comment: C: edit read alignments in bam region
10.0 years ago by 14134125465346445 ★ 3.6k
1
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4
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2.6k
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Resort bam from another bam header
bam
updated 10 months ago by 43k • written 10.0 years ago by ★ 3.6k
13
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17
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5.0k
views
Mapq Scores Inside Repeats
alignment
10.1 years ago by 14134125465346445 ★ 3.6k
0
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1
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1.7k
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Number Of Tandem Duplications Within 10Kb In Vertebrate Genomes?
repeats genome
updated 10.1 years ago by 20 • written 11.0 years ago by ★ 3.6k
0
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1
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4.3k
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Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
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Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
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Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
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Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
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Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
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Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
views
Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
5
votes
17
replies
4.3k
views
Interpreting Genome_Structural_Correction Block_Bootstrap.Py
statistics encode
10.2 years ago by 14134125465346445 ★ 3.6k
0
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1
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4.3k
views
Comment: C: Interpreting Genome_Structural_Correction Block_Bootstrap.Py
10.2 years ago by 14134125465346445 ★ 3.6k
0
votes
1
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31k
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Comment: C: Looking For A Way To Count Total Length Of Regions Of Bed File
10.2 years ago by 14134125465346445 ★ 3.6k
0
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0
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6.4k
views
Comment: C: Bed File Of Mapq Sliding Window On A Bam File?
10.2 years ago by 14134125465346445 ★ 3.6k
1
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1
reply
6.4k
views
Comment: C: Bed File Of Mapq Sliding Window On A Bam File?
10.2 years ago by 14134125465346445 ★ 3.6k
0
votes
1
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6.4k
views
Comment: C: Bed File Of Mapq Sliding Window On A Bam File?
10.2 years ago by 14134125465346445 ★ 3.6k
15
votes
13
replies
6.4k
views
Bed File Of Mapq Sliding Window On A Bam File?
bed bam bedtools
10.2 years ago by 14134125465346445 ★ 3.6k
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