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Showing :
questions
23
votes
4
replies
38k
views
bcftools compressing and indexing vcf files
sequence
bcftools
vcf
index
updated 5 months ago by
GenoMax
142k • written 5.7 years ago by
Inquisitive8995
▴ 270
0
votes
1
reply
441
views
Comparison between two files with chromosomes and positions
AWK
updated 13 months ago by
Ram
43k • written 2.2 years ago by
Inquisitive8995
▴ 270
1
vote
3
replies
1.2k
views
Exclude specified range of bases from multiple sequences in a FASTA file
FASTA
Assembly
updated 13 months ago by
Ram
43k • written 2.6 years ago by
Inquisitive8995
▴ 270
0
votes
5
replies
1.4k
views
Removing specified range of bases from middle of the contigs and creating new sequences
Contigs
Assembly
fastafile
updated 2.8 years ago by
cpad0112
21k • written 2.8 years ago by
Inquisitive8995
▴ 270
12
votes
8
replies
14k
views
Genome assembly N50
Assembly
assembly tools
N50
updated 2.9 years ago by
lieven.sterck
15k • written 5.9 years ago by
Inquisitive8995
▴ 270
8
votes
3
replies
2.6k
views
Create duplicate columns in R for a large data frame
R
dataframe
updated 3.1 years ago by
cpad0112
21k • written 3.1 years ago by
Inquisitive8995
▴ 270
0
votes
2
replies
2.0k
views
GAPIT error : invalid '(to - from)/by'
GWAS
R
programming
3.1 years ago by
Inquisitive8995
▴ 270
2
votes
4
replies
3.4k
views
VCF tools --freq output file
allele-frequency
VCFtools
updated 13 months ago by
Ram
43k • written 3.8 years ago by
Inquisitive8995
▴ 270
3
votes
7
replies
4.8k
views
Minimap2 giving 2 TB sam file as an output
sequence
minimap2
alignment
updated 4.5 years ago by
h.mon
35k • written 4.5 years ago by
Inquisitive8995
▴ 270
4
votes
3
replies
3.0k
views
what do the bcftools ROH output "markers & quality" fields indicate ?
sequencing
ROH
updated 2.1 years ago by
taniamahmood38
▴ 50 • written 4.8 years ago by
Inquisitive8995
▴ 270
12
votes
6
replies
2.5k
views
How to find pattern matching over range of columns but not present in other columns?
snp
R
shell
updated 4.8 years ago by
AK
★ 2.2k • written 4.8 years ago by
Inquisitive8995
▴ 270
4
votes
6
replies
7.2k
views
Create a plot based on binary input of 1s and 0s.
R
script
plot
updated 5.1 years ago by
zx8754
11k • written 5.1 years ago by
Inquisitive8995
▴ 270
0
votes
4
replies
2.0k
views
Bedtools intersect error
software error
sequence
vcf
5.1 years ago by
Inquisitive8995
▴ 270
2
votes
5
replies
1.1k
views
Augustus Genome annotation
genome
annotation
updated 5.2 years ago by
lieven.sterck
15k • written 5.2 years ago by
Inquisitive8995
▴ 270
11
votes
18
replies
3.4k
views
6 follow
How to extract filename and change text in the same file
sequence
VCF
Script
updated 5.2 years ago by
Malcolm.Cook
★ 1.5k • written 5.2 years ago by
Inquisitive8995
▴ 270
1
vote
10
replies
1.4k
views
Creation of separate sample sheet for demultiplexing
sequencing
samplesheet
alignment
5.3 years ago by
Inquisitive8995
▴ 270
4
votes
1
reply
2.0k
views
Common reads between two fastq files
exome
sequence
Assembly
updated 7 weeks ago by
Ram
43k • written 5.3 years ago by
Inquisitive8995
▴ 270
0
votes
5
replies
937
views
Add string to a column of a file and retain the rest
linux
awk
5.6 years ago by
Inquisitive8995
▴ 270
2
votes
13
replies
3.1k
views
NCBI edirect efetch error
software error
NCBI
Taxonomy
updated 5.6 years ago by
h.mon
35k • written 5.6 years ago by
Inquisitive8995
▴ 270
3
votes
2
replies
1.3k
views
Create chromosome painter using trio sample data
trio analysis
DNA painter
SNP
5.6 years ago by
Inquisitive8995
▴ 270
2
votes
5
replies
1.2k
views
In RNA Seq, How does the AT content help us to know if the data is contaminated ?
RNA-Seq
AT-content
sequencing
updated 5.6 years ago by
Charles Warden
8.2k • written 5.6 years ago by
Inquisitive8995
▴ 270
8
votes
16
replies
3.3k
views
Replace symbols in R table
R
gsub
vcf
updated 5.6 years ago by
Santosh Anand
5.7k • written 5.6 years ago by
Inquisitive8995
▴ 270
0
votes
4
replies
1.9k
views
SortmeRNA facing error
Error
SortmeRNA
rna-seq
updated 5.6 years ago by
h.mon
35k • written 5.6 years ago by
Inquisitive8995
▴ 270
2
votes
7
replies
8.6k
views
bcftools variant filteration
variant analysis
bcftools
filteration
updated 5.7 years ago by
finswimmer
16k • written 5.7 years ago by
Inquisitive8995
▴ 270
4
votes
4
replies
5.7k
views
bwa index output files
Assembly
bwa
indexing
updated 5.8 years ago by
ATpoint
82k • written 5.8 years ago by
Inquisitive8995
▴ 270
5
votes
5
replies
776
views
Making softwares usable across all directories
assembly
linux
updated 5.8 years ago by
ATpoint
82k • written 5.8 years ago by
Inquisitive8995
▴ 270
5
votes
5
replies
2.4k
views
Ancestry Informative Markers
Ancestry
AIMs
1000 Genomes Project
updated 5.8 years ago by
Shicheng Guo
★ 9.4k • written 6.5 years ago by
Inquisitive8995
▴ 270
3
votes
2
replies
3.1k
views
Population Genetics Data analysis using Arlequin
Population Genetics
Arlequin
PGDSpider
updated 6.0 years ago by
HG
▴ 30 • written 6.8 years ago by
Inquisitive8995
▴ 270
0
votes
7
replies
15k
views
Delete columns with specific headers in a dataframe in R
R
Dataframes
updated 6.4 years ago by
Nicolas Rosewick
11k • written 6.4 years ago by
Inquisitive8995
▴ 270
0
votes
0
replies
1.4k
views
Raw files from FTDNA & AncestryDNA to plink format
Genetic Ancestry
Raw files
Plink
6.7 years ago by
Inquisitive8995
▴ 270
3
votes
4
replies
2.1k
views
Ancestry Informative Markers
snp
Popualation Genetics
Ancestry
6.8 years ago by
Inquisitive8995
▴ 270
0
votes
0
replies
1.1k
views
Need Haplogroups Information
snp
R
software error
7.0 years ago by
Inquisitive8995
▴ 270
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