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Comment: Comment: Why is DESeq2 normalization making my top feature have identical values across s
25 days ago by DNAngel ▴ 250
0
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1
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347
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Comment: Comment: Why is DESeq2 normalization making my top feature have identical values across s
25 days ago by DNAngel ▴ 250
1
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3
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347
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Why is DESeq2 normalization making my top feature have identical values across samples?
DESEQ2 WGCNA
25 days ago by DNAngel ▴ 250
0
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0
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129
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Should I keep taxa that have 0 counts when calculating alpha diversity?
Shannon-Weiner
4 weeks ago by DNAngel ▴ 250
0
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0
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861
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Comment: Comment: Samtools unmapped reads
14 months ago by DNAngel ▴ 250
0
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5
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861
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Samtools unmapped reads
samtools
14 months ago by DNAngel ▴ 250
0
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0
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861
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Comment: Comment: Samtools unmapped reads
15 months ago by DNAngel ▴ 250
0
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0
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1.0k
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Comment: Comment: Samtools mapped and unmapped flags, what is the difference between the flags?
15 months ago by DNAngel ▴ 250
0
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1
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1.0k
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Comment: Comment: Samtools mapped and unmapped flags, what is the difference between the flags?
15 months ago by DNAngel ▴ 250
0
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3
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1.0k
views
Samtools mapped and unmapped flags, what is the difference between the flags?
samtools
15 months ago by DNAngel ▴ 250
2
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2
replies
600
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How do you get functional/biological role of motifs?
JASPAR
updated 15 months ago by 4.6k • written 15 months ago by ▴ 250
0
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1
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1.2k
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Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
15 months ago by DNAngel ▴ 250
0
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1
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1.2k
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Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
15 months ago by DNAngel ▴ 250
0
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2
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1.2k
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Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
15 months ago by DNAngel ▴ 250
2
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8
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1.2k
views
How to get names and class information from a list of target IDs from the JASPAR database?
JASPAR
updated 15 months ago by 82k • written 15 months ago by ▴ 250
0
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0
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693
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Comment: Comment: Program to detect cis-regulatory modules for a non model species?
17 months ago by DNAngel ▴ 250
0
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0
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693
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Comment: Comment: Program to detect cis-regulatory modules for a non model species?
17 months ago by DNAngel ▴ 250
3
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3
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693
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Program to detect cis-regulatory modules for a non model species?
factors transcription
17 months ago by DNAngel ▴ 250
0
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1
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790
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Comment: Comment: How do you find transcription factors in a newly sequenced genome?
18 months ago by DNAngel ▴ 250
4
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3
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790
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How do you find transcription factors in a newly sequenced genome?
interproscan factors transcription
updated 18 months ago by ▴ 20 • written 18 months ago by ▴ 250
1
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1
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1.0k
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
19 months ago by DNAngel ▴ 250
0
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1
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1.0k
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
19 months ago by DNAngel ▴ 250
0
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0
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1.0k
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
19 months ago by DNAngel ▴ 250
0
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1
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1.0k
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
19 months ago by DNAngel ▴ 250
7
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8
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1.0k
views
How do you obtain a list of transcription factors from a genome?
transcription-factor
updated 13 months ago by 43k • written 19 months ago by ▴ 250
0
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6
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1.9k
views
Confused about which database to use - nt or nr?
blast
updated 19 months ago by 11k • written 19 months ago by ▴ 250
0
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2
replies
688
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What happened to the SparCC github repository?
sparcc
updated 2.0 years ago by ★ 2.0k • written 2.0 years ago by ▴ 250
0
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0
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4.7k
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Comment: Comment: WGCNA exportNetworkToCytoscape issue!!
2.3 years ago by DNAngel ▴ 250
2
votes
8
replies
3.3k
views
Why does Kraken2 not produce taxon percentages with --report flag?
kraken2
updated 2.4 years ago by ▴ 100 • written 3.0 years ago by ▴ 250
0
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0
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616
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Can I use DESeq2 to analyze my abundance dataset, which also happens to have a lot of zeros?
deseq2
2.6 years ago by DNAngel ▴ 250
0
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0
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2.1k
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Comment: Comment: Is there really a difference in blastn -task blastn and -task megablast when dea
2.6 years ago by DNAngel ▴ 250
0
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1
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2.1k
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Comment: Comment: Is there really a difference in blastn -task blastn and -task megablast when dea
2.6 years ago by DNAngel ▴ 250
0
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4
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2.1k
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Forum: Is there really a difference in blastn -task blastn and -task megablast when dealing with unmapped reads?
blastn
2.6 years ago by DNAngel ▴ 250
0
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0
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1.3k
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Comment: Comment: WGCNA, what does it mean if no hub genes are identified?
2.6 years ago by DNAngel ▴ 250
0
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1
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1.3k
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Comment: Comment: WGCNA, what does it mean if no hub genes are identified?
2.6 years ago by DNAngel ▴ 250
2
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4
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1.3k
views
WGCNA, what does it mean if no hub genes are identified?
WGCNA
2.6 years ago by DNAngel ▴ 250
1
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0
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590
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R package for determining best model transformation for a dataset?
R
2.7 years ago by DNAngel ▴ 250
0
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1
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3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.7 years ago by DNAngel ▴ 250
0
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0
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3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.7 years ago by DNAngel ▴ 250
0
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1
reply
3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.7 years ago by DNAngel ▴ 250
0
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2
replies
3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.7 years ago by DNAngel ▴ 250
0
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0
replies
3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.7 years ago by DNAngel ▴ 250
11
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15
replies
3.4k
views
Output of samtools view, what does the third column actually represent?
samtools
updated 2.7 years ago by 19k • written 2.7 years ago by ▴ 250
0
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2
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3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.7 years ago by DNAngel ▴ 250
0
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0
replies
572
views
How to find out how many reads were used in contig assembly in metaSPADES?
metaspades
2.7 years ago by DNAngel ▴ 250
1
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1
reply
1.6k
views
How do you interpret Tukey's significance when there is no group clustering alone?
Tukey
2.7 years ago by DNAngel ▴ 250
0
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0
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1.6k
views
Answer: Answer: How do you interpret Tukey's significance when there is no group clustering alon
2.7 years ago by DNAngel ▴ 250
1
vote
1
reply
1.3k
views
What is the difference between using -max_target_seqs 1 -max_hsps 1 versus just the defaults and then filtering for top hit?
blast
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 250
0
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0
replies
530
views
R vegdist does not compute distances for all my sites
vegan vegdist R
updated 2.7 years ago by 43k • written 2.7 years ago by ▴ 250
3
votes
1
reply
1.9k
views
What is the recommended contig length to filter?
metaspades
updated 2.8 years ago by ★ 27k • written 2.8 years ago by ▴ 250
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