How to find out how many reads were used in contig assembly in metaSPADES?
After running metaspades, I have my contigs.fasta files and all other log files but none of them show me what reads or how many reads were used in the creation of my contigs.
- Does metaspades even report such a thing?
- Does anyone know if the same read can be used in multiple contigs?
- After running the different kmers to produce the contigs, does metaspades combine the nodes from each kmer somehow? Or would NODE 1 in the final contigs file be from Kmer 77 whereas NODE 2 would come K 55 for example...
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