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Comment: Comment: why renaming Idents in Seurat object doesn't work?
6 days ago by Assa Yeroslaviz ★ 1.8k
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3
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413
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why renaming Idents in Seurat object doesn't work?
Seurat RenameIdents R
6 days ago by Assa Yeroslaviz ★ 1.8k
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0
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413
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Answer: Answer: why renaming Idents in Seurat object doesn't work?
updated 10 days ago by 43k • written 11 days ago by ★ 1.8k
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0
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573
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Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
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573
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Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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1
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573
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Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
573
views
Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
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573
views
Comment: Comment: Can index hopping lead to more reads in samples?
4 weeks ago by Assa Yeroslaviz ★ 1.8k
1
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9
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573
views
Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
4 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
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256
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What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
4 weeks ago by Assa Yeroslaviz ★ 1.8k
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0
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294
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Comment: Comment: annotating single-cell clusters from gene lists
10 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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2
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294
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annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 1.8k
0
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0
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141
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Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
3 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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195
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Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
3 months ago by Assa Yeroslaviz ★ 1.8k
3
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4
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578
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split sequences into their codons in a table
R fasta codon-table
3 months ago by Assa Yeroslaviz ★ 1.8k
1
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0
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578
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Answer: Answer: split sequences into their codons in a table
3 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
161
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cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
3 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
1
reply
287
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 3 months ago by 13k • written 3 months ago by ★ 1.8k
1
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8
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1.5k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 4 months ago by 82k • written 9 months ago by ★ 1.8k
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0
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250
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extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
5 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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602
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Comment: Comment: Plotting gene Expression per pathway
6 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
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602
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Comment: Comment: Plotting gene Expression per pathway
6 months ago by Assa Yeroslaviz ★ 1.8k
1
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4
replies
602
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
6 months ago by Assa Yeroslaviz ★ 1.8k
3
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6
replies
875
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 7 months ago by 43k • written 7 months ago by ★ 1.8k
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1
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875
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Comment: Comment: summarize consecutive columns over a data frame
7 months ago by Assa Yeroslaviz ★ 1.8k
1
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3
replies
819
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trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 7 months ago by ★ 16k • written 8 months ago by ★ 1.8k
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1
reply
819
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Comment: Comment: trajectory-like graph for a data frame
8 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
1.5k
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Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
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1.5k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
600
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Comment: Comment: WGS sequencing data based proteomics analysis
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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4
replies
600
views
WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 9 months ago by ★ 1.1k • written 9 months ago by ★ 1.8k
1
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1
reply
6.6k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
6.6k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
6.6k
views
Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
407
views
Comment: Comment: Checking significance in trend of time-series analysis for count data
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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2
replies
407
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
10 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
876
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
876
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by Assa Yeroslaviz ★ 1.8k
1
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5
replies
876
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 10 months ago by ★ 1.6k • written 10 months ago by ★ 1.8k
2
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2
replies
900
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 5 months ago by ▴ 210 • written 10 months ago by ★ 1.8k
0
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1
reply
1.2k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 11 months ago by 13k • written 11 months ago by ★ 1.8k
5
votes
2
replies
644
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 12 months ago by 82k • written 12 months ago by ★ 1.8k
8
votes
5
replies
2.3k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 12 months ago by 142k • written 2.9 years ago by ★ 1.8k
1
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1
reply
472
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
12 months ago by Assa Yeroslaviz ★ 1.8k
1
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0
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472
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Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
12 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
387
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 10 months ago by 43k • written 13 months ago by ★ 1.8k
0
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1
reply
3.2k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
3.2k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
3.2k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
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2
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3.2k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
561 results • Page 1 of 12
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