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0
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replies
231
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Comment:
Comment: annotating single-cell clusters from gene lists
21 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
231
views
annotating single-cell clusters from gene lists
annotation
FindAllMarkers
Seurat
cell-type
updated 21 days ago by
Ram
43k • written 21 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
113
views
Correlating Chip-Seq and proteimics results
chip-seq
correlations
proteomics
7 weeks ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
143
views
Understanding Homer output for makeTagDirectory
chip-seq
peaks
homer
makeTagDirectory
8 weeks ago by
Assa Yeroslaviz
★ 1.8k
3
votes
4
replies
480
views
split sequences into their codons in a table
R
fasta
codon-table
8 weeks ago by
Assa Yeroslaviz
★ 1.8k
1
vote
0
replies
480
views
Answer:
Answer: split sequences into their codons in a table
8 weeks ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
132
views
cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation
peak
chip-seq
phantompeak
ChIPseeker
8 weeks ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
230
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures
chipseq
chipseeker
annoDB
TxDb
updated 9 weeks ago by
rpolicastro
13k • written 9 weeks ago by
Assa Yeroslaviz
★ 1.8k
1
vote
8
replies
1.4k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count
cellranger
cite-seq
scRNA-seq
updated 12 weeks ago by
ATpoint
81k • written 8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
189
views
extracting Uniprot IDs for Kegg pathways
mapping
uniprot
R
kegg
clusterprofiler
3 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
526
views
Comment:
Comment: Plotting gene Expression per pathway
5 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
526
views
Comment:
Comment: Plotting gene Expression per pathway
5 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
4
replies
526
views
Plotting gene Expression per pathway
GO-enrichment
gene-expression
R
ggplot
RNA-seq
5 months ago by
Assa Yeroslaviz
★ 1.8k
3
votes
6
replies
778
views
summarize consecutive columns over a data frame
tidyverse
r
offtopic
updated 5 months ago by
Ram
43k • written 6 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
778
views
Comment:
Comment: summarize consecutive columns over a data frame
6 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
3
replies
736
views
trajectory-like graph for a data frame
trajectory
rna-seq
tidyverse
r
velocity
updated 6 months ago by
jared.andrews07
★ 16k • written 6 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
736
views
Comment:
Comment: trajectory-like graph for a data frame
6 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
1.4k
views
Comment:
Comment: counts of cite-seq-count vs. cellrenager varies tremendously
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
1.4k
views
Comment:
Comment: counts of cite-seq-count vs. cellrenager varies tremendously
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
543
views
Comment:
Comment: WGS sequencing data based proteomics analysis
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
4
replies
543
views
WGS sequencing data based proteomics analysis
workflow
UniProt
proteomics
WGS
RNA-Seq
updated 8 months ago by
biofalconch
★ 1.1k • written 8 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
6.4k
views
Comment:
Comment: scRNA-seq CITE-seq-count bioinformatics
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
6.4k
views
Comment:
Comment: scRNA-seq CITE-seq-count bioinformatics
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
6.4k
views
Answer:
Answer: scRNA-seq CITE-seq-count bioinformatics
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
372
views
Comment:
Comment: Checking significance in trend of time-series analysis for count data
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
372
views
Checking significance in trend of time-series analysis for count data
glm
RNA-Seq
time-series
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
777
views
Comment:
Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
8 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
777
views
Comment:
Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
8 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
5
replies
777
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR
celldex
cell-type-annotations
scRNA
updated 8 months ago by
Nitin Narwade
★ 1.6k • written 8 months ago by
Assa Yeroslaviz
★ 1.8k
2
votes
2
replies
796
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment
scDblFinder
SMART-Seq
updated 3 months ago by
e.r.zakiev
▴ 170 • written 9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
1.0k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat
single-cell
FindVariableFeatures
FindAllMarkers
RNA-Seq
updated 9 months ago by
rpolicastro
13k • written 9 months ago by
Assa Yeroslaviz
★ 1.8k
5
votes
2
replies
590
views
ERCC normalization within DESeq2
normalization
ERCC
size.factors
DESeq2
updated 10 months ago by
ATpoint
81k • written 10 months ago by
Assa Yeroslaviz
★ 1.8k
8
votes
5
replies
2.1k
views
DESeq2 model matrix not full rank
full-rank
model-matrix
deseq2
updated 10 months ago by
GenoMax
140k • written 2.7 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
432
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment
plotColData
scater
10 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
0
replies
432
views
Answer:
Answer: Can I add labels to (some) cells in a plotColData from scater?
10 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
358
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage
deepTools
updated 9 months ago by
Ram
43k • written 11 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
10
votes
17
replies
2.8k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell
smart-seq
updated 12 months ago by
dsull
★ 5.6k • written 12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
2.8k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
362
views
bamComparing ChIp-Seq samples with strange coverage between chipped and Input
normalization
bamCompare
deepTools
updated 9 months ago by
Ram
43k • written 13 months ago by
Assa Yeroslaviz
★ 1.8k
3
votes
4
replies
2.3k
views
STAR aligner can't map too short reads
ribo-seq
star
updated 14 months ago by
i.sudbery
18k • written 14 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
839
views
Comment:
Comment: How to calculate the offset for a riboseq experiment
15 months ago by
Assa Yeroslaviz
★ 1.8k
4
votes
3
replies
839
views
How to calculate the offset for a riboseq experiment
sequencing
p-site
riboseq
offset
updated 15 months ago by
Jack Tierney
▴ 350 • written 15 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to interpret the nine-square plot from mageckFlute
15 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to interpret the nine-square plot from mageckFlute
15 months ago by
Assa Yeroslaviz
★ 1.8k
551 results • Page
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