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Comment: C: How to assign Active Enhancer to every genes within 10 kb region?
7.2 years ago by Bioinformatist Newbie ▴ 270
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6
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2.2k
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How to assign Active Enhancer to every genes within 10 kb region?
Enhancer Bedops Closest
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 270
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5.6k
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Comment: C: Annotaion Based On The Genomic Range
7.2 years ago by Bioinformatist Newbie ▴ 270
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0
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8.4k
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Comment: C: ChromHMM 15 State Descriptions (Genic Enhancer)
7.2 years ago by Bioinformatist Newbie ▴ 270
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1
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3.1k
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Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transcriptomics (RNA-seq, expression profilling)
Chromatin Accessibility Transcriptomics
updated 7.3 years ago by ▴ 600 • written 8.1 years ago by ▴ 270
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1.7k
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Processing RNA-seq data by following Roadmap Epigenomics Pipeline
Roadmap RNA-seq
7.5 years ago by Bioinformatist Newbie ▴ 270
6
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1
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3.0k
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Identify Target genes of an enhancer
Enhancer Peaks
updated 7.7 years ago by 28k • written 7.8 years ago by ▴ 270
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1
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2.0k
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Identify target miRNA for a mRNA
miRNA
updated 21 months ago by 43k • written 8.4 years ago by ▴ 270
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0
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1.7k
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Comment: C: Prediction of TF binding sites at genome wide scale
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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7.1k
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Comment: C: How to query for a specific motif upstream of each of the gene in a list?
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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1.7k
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Answer: A: Prediction of TF binding sites at genome wide scale
7.8 years ago by Bioinformatist Newbie ▴ 270
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3
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1.7k
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Prediction of TF binding sites at genome wide scale
ChIP-Seq TFBS Prediction
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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19k
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Comment: C: findOverlaps function in R
7.8 years ago by Bioinformatist Newbie ▴ 270
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1
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5.5k
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Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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5.5k
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Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
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1
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9.9k
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Comment: C: Annotate Regions In Bed File With Nearest Downstream Gene
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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5.5k
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Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
5.5k
views
Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
5.5k
views
Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
0
votes
1
reply
5.5k
views
Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
0
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0
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5.5k
views
Comment: C: Annotate peaks based on Histone Mark
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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5.0k
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Comment: C: Mapping Paired End Solid Data Using Bwa
7.8 years ago by Bioinformatist Newbie ▴ 270
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0
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8.2k
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Comment: C: Aligning Colorspace Reads Using Bwa
7.8 years ago by Bioinformatist Newbie ▴ 270
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1
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26k
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Comment: C: Calculate Per Exon/Per Gene Coverage
7.9 years ago by Bioinformatist Newbie ▴ 270
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1
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26k
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Comment: C: Calculate Per Exon/Per Gene Coverage
7.9 years ago by Bioinformatist Newbie ▴ 270
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1
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16k
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Comment: C: Convert HTSeq count table to RPKM value using GFF/GTF
7.9 years ago by Bioinformatist Newbie ▴ 270
1
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1
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37k
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Comment: C: GTF annotation file for Human
8.0 years ago by Bioinformatist Newbie ▴ 270
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0
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13k
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Comment: C: Mapping Between Affymetrix Features To Genes
8.0 years ago by Bioinformatist Newbie ▴ 270
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0
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2.2k
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Comment: C: Chip-Seq (Transcription Factor) data resources
8.0 years ago by Bioinformatist Newbie ▴ 270
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1
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2.2k
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Comment: C: Chip-Seq (Transcription Factor) data resources
8.0 years ago by Bioinformatist Newbie ▴ 270
6
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9
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2.2k
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Chip-Seq (Transcription Factor) data resources
ChIP-Seq Transcription factor Datasets
updated 8.0 years ago by 104k • written 8.0 years ago by ▴ 270
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0
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3.3k
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Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.3k
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Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.3k
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Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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0
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3.9k
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Comment: C: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.3k
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Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.1 years ago by Bioinformatist Newbie ▴ 270
1
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9
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3.3k
views
Threshold for calling DNAse-seq peaks ON or OFF
DNase-seq peaks cutoff Roadmap
updated 8.1 years ago by 35k • written 8.1 years ago by ▴ 270
0
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0
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2.3k
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Comment: C: How to identify Accessible genes from DNase-seq?
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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0
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7.3k
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Comment: C: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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0
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7.3k
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Comment: C: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.9k
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Comment: C: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
8.1 years ago by Bioinformatist Newbie ▴ 270
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0
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8.2k
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Comment: C: Large-scale open-source bioinformatics datasets
8.1 years ago by Bioinformatist Newbie ▴ 270
1
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0
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72k
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Comment: C: Analysing Microarray Data In Bioconductor
8.1 years ago by Bioinformatist Newbie ▴ 270
0
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1
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19k
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Comment: Comment: how to use log transformation with read count data?
updated 3.1 years ago by 43k • written 8.2 years ago by ▴ 270
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0
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1.6k
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How to find out Drug Mode of Action?
mRNA splicing MoA exon-skipping
8.3 years ago by Bioinformatist Newbie ▴ 270
0
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0
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3.7k
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Comment: C: Peak calling with MACS for DNase-seq data and Peak annotation by Homer
8.4 years ago by Bioinformatist Newbie ▴ 270
0
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3
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3.7k
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Peak calling with MACS for DNase-seq data and Peak annotation by Homer
DNase-seq MACS Homer Peak-Calling
updated 21 months ago by 43k • written 8.4 years ago by ▴ 270
0
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1
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2.3k
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Comment: C: How to identify Accessible genes from DNase-seq?
8.4 years ago by Bioinformatist Newbie ▴ 270
3
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5
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2.3k
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How to identify Accessible genes from DNase-seq?
DNase-seq Homer DNA-Accessibility
updated 21 months ago by 43k • written 8.4 years ago by ▴ 270
0
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2
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2.2k
views
Comment: C: How to booleanize gene expression data from 1 cell type.
8.4 years ago by Bioinformatist Newbie ▴ 270
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