Chip-Seq (Transcription Factor) data resources

Question

[Bioinformatist Newbie]

Is there any other resource out there (beside ENCODE) which has Chip-seq data for various TFs across different cell lines/types ? If you know any study in which they profiled a cell line for various TFs then kindly share this information.

[Ming Tommy Tang]

I put some resources here https://github.com/crazyhottommy/ChIP-seq-analysis#resources-for-chip-seq-data

Answer 1

[Devon Ryan]

Not really cell lines, but cell/tissue types: IHEC

[Bioinformatist Newbie]

All I am able to find in IHEC is ChiP-seq for different histone marks, not for Transcription factors. Can you please share the link of any such experiment from IHEC where they are providing Chip-Seq for a TF and that experiment is not from ENCODE?

[Devon Ryan]

You'd need to go here and select "Show non-core assays". Having said that, it looks like the only assays currently available are from Encode.

[Bioinformatist Newbie]

It means we can get ChiP-seq data for different TFs only in ENCODE, there is no alternate resource providing such information..!

Answer 2

[Benn]

blueprint is for blood cells

http://www.blueprint-epigenome.eu/

[Emily]

No TFs in Blueprint, just histone modifications.

[Benn]

Oh sorry, thanks for clarifying that Emily.

[Emily]

I only found this out last week. I had also assumed they have TFs and stuff.