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3
votes
3
replies
268
views
Genbank vs SRA
ncbi genbank genomics sra
updated 25 days ago by ★ 27k • written 25 days ago by ▴ 520
3
votes
4
replies
818
views
Should assemblies be removed if core gene alignment is identical?
phylogenetics genome alignment pangenome
19 months ago by c_u ▴ 520
5
votes
10
replies
3.0k
views
How to use a downloaded BLAST database
blast
updated 2.6 years ago by 142k • written 2.6 years ago by ▴ 520
5
votes
8
replies
1.8k
views
How to make fasta manipulation more efficient
fasta sequence
2.7 years ago by c_u ▴ 520
1
vote
1
reply
687
views
Effect of unequal sample sizes on p-value
statistics conceptual
updated 2.7 years ago by ★ 2.9k • written 2.7 years ago by ▴ 520
2
votes
2
replies
741
views
Effect of different sample sizes on p-value
statistics conceptual
2.7 years ago by c_u ▴ 520
6
votes
4
replies
1.9k
views
How can read-count from BAM file be greater than than from fastq file?
rna-seq
updated 2.8 years ago by 19k • written 2.8 years ago by ▴ 520
9
votes
10
replies
1.9k
views
How to use Poisson distribution to get meaningful expression counts?
statistics rna-seq
updated 2.8 years ago by 19k • written 2.8 years ago by ▴ 520
7
votes
9
replies
2.2k
views
[CONCEPTUAL] Mutant analysis - should the t-test be paired or unpaired?
statistics conceptual
updated 3.0 years ago by ★ 2.9k • written 3.0 years ago by ▴ 520
5
votes
6
replies
3.1k
views
Stringie output doesn't have any gene names!
stringtie RNA-Seq
updated 3.7 years ago by ★ 4.1k • written 4.6 years ago by ▴ 520
3
votes
3
replies
955
views
Code/Tool to locally do sequence alignment
sequencing alignment
updated 3.7 years ago by ▴ 50 • written 3.7 years ago by ▴ 520
5
votes
5
replies
1.4k
views
Basic question about using ./configure for installing a software
installation jellyfish
updated 4.0 years ago by 20 • written 5.2 years ago by ▴ 520
18
votes
10
replies
5.5k
views
Should I normalize read counts if I want to run plotPCA?
RNA-Seq
updated 10 weeks ago by • 0 • written 4.1 years ago by ▴ 520
9
votes
7
replies
1.9k
views
Can I use DESeq2 for non-coding RNA?
RNA-Seq DESeq2 noncoding
updated 4.2 years ago by ★ 1.1k • written 4.2 years ago by ▴ 520
3
votes
3
replies
1.0k
views
Can fusion transcript softwares distinguish between gene-fusions and transcript-fusions?
RNA-Seq Fusion
4.3 years ago by c_u ▴ 520
5
votes
8
replies
1.2k
views
How to perform transcriptomic clustering to find bad samples?
RNA-Seq transcriptome
4.3 years ago by c_u ▴ 520
0
votes
1
reply
3.5k
views
Rename samples for plotting using plotPCA
RNA-Seq DESeq2
4.3 years ago by c_u ▴ 520
7
votes
7
replies
1.5k
views
Suggestion needed for finding fusion transcripts
RNA-Seq fusion-transcripts
4.3 years ago by c_u ▴ 520
5
votes
9
replies
2.3k
views
Program to find genes up/down-regulated by a given gene
geo upregulated gene downregulated
updated 14 months ago by 43k • written 9.3 years ago by ▴ 520
3
votes
5
replies
3.1k
views
tximport output should be integer values, IS NOT.
RNA-Seq stringtie
4.4 years ago by c_u ▴ 520
11
votes
6
replies
2.6k
views
Is this a good way to find non-coding transcripts from stranded RNA-seq data?
RNA-Seq assembly
updated 4.5 years ago by ▴ 140 • written 4.5 years ago by ▴ 520
16
votes
15
replies
14k
views
How to perform strand-aware (RNA-Seq) mapping using STAR?
RNA-Seq
4.5 years ago by c_u ▴ 520
20
votes
4
replies
7.8k
views
Difference between abundance and counts in RNA-Seq
RNA-Seq tximport
4.6 years ago by c_u ▴ 520
7
votes
3
replies
4.6k
views
Why run FeatureCounts after Stringtie? (Galaxy recommends!)
RNA-Seq
updated 4.8 years ago by ★ 4.1k • written 4.8 years ago by ▴ 520
1
vote
2
replies
3.3k
views
How do you find novel transcripts using GFFcompare?
RNA-Seq gffcompare
4.8 years ago by c_u ▴ 520
17
votes
13
replies
3.3k
views
Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcriptome?
RNA-Seq
4.9 years ago by c_u ▴ 520
8
votes
3
replies
1.1k
views
Measure expression level of a single (novel) transcript in multiple fastq files
RNA-Seq
4.9 years ago by c_u ▴ 520
8
votes
6
replies
1.1k
views
How to find read count for a newly discovered transcript
RNA-Seq trinity
5.1 years ago by c_u ▴ 520
5
votes
5
replies
5.7k
views
Extract R1 and R2 bam files from merged bam file
RNA-Seq samtools
updated 5.9 years ago by 35k • written 5.9 years ago by ▴ 520
4
votes
4
replies
1.7k
views
Why does this samtools command work?
RNA-Seq samtools
updated 5.9 years ago by 35k • written 5.9 years ago by ▴ 520
0
votes
0
replies
1.1k
views
Can we look at interactions between host genome and pathogen genome from Hi-C data?
genome genomics human genome interactions
6.0 years ago by c_u ▴ 520
3
votes
5
replies
1.5k
views
Finding restriction sites when the gene is on the negative strand
dna rna strand
updated 6.0 years ago by ★ 2.9k • written 6.0 years ago by ▴ 520
4
votes
6
replies
1.5k
views
Is there gold standard data for ancestral reconstruction?
phylogenetics evolution protein gene
updated 6.1 years ago by 27k • written 6.1 years ago by ▴ 520
2
votes
3
replies
2.9k
views
GTF2BED does not provide meaningful output?
gtf bed RNA-Seq
updated 6.5 years ago by 35k • written 6.5 years ago by ▴ 520
8
votes
10
replies
3.5k
views
How to get a list of all ribosomal genes in Rat?
RNA-Seq rat gene-list
updated 6.5 years ago by ▴ 470 • written 6.5 years ago by ▴ 520
2
votes
12
replies
4.3k
views
Finding over-represented sequences in fastq file
RNA-Seq fastq
6.5 years ago by c_u ▴ 520
12
votes
5
replies
9.8k
views
Extracting 5'UTR and 3'UTR bed files from gtf file
rna RNA-Seq gtf bed
updated 6.5 years ago by ▴ 630 • written 6.5 years ago by ▴ 520
5
votes
10
replies
1.8k
views
Low mapped percentage. How to know if data is junk?
RNA-Seq tophat
6.5 years ago by c_u ▴ 520
5
votes
5
replies
5.0k
views
Doing GSEA analysis on a set of genes
RNA-Seq gsea enrichment
updated 6.6 years ago by 7.5k • written 6.6 years ago by ▴ 520
4
votes
2
replies
1.9k
views
Finding RNA sequences for a list of genes
rna RNA-Seq list genes
6.6 years ago by c_u ▴ 520
5
votes
2
replies
1.9k
views
Where to find a list of rat protein coding genes?
rat genome gene-list
6.6 years ago by c_u ▴ 520
7
votes
1
reply
4.2k
views
Do I need to merge bai files also, while merging bam files
bam RNA-Seq
updated 6.6 years ago by ★ 2.9k • written 6.6 years ago by ▴ 520
1
vote
2
replies
2.7k
views
Error in creating a volcano plot in MATLAB
matlab RNA-Seq plot
6.6 years ago by c_u ▴ 520
0
votes
4
replies
1.8k
views
SRAtoolkit: error while running sam-dump
SRA sratoolkit ncbi sam
6.7 years ago by c_u ▴ 520
6
votes
3
replies
1.6k
views
Is it possible to search Pubmed articles for a specific organism?
pubmed search
updated 7.0 years ago by ▴ 830 • written 7.0 years ago by ▴ 520
45 results • Page 1 of 1
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