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Showing :
questions
3
votes
3
replies
226
views
Genbank vs SRA
ncbi
genbank
genomics
sra
updated 11 days ago by
Mensur Dlakic
★ 27k • written 11 days ago by
c_u
▴ 520
3
votes
4
replies
807
views
Should assemblies be removed if core gene alignment is identical?
phylogenetics
genome
alignment
pangenome
19 months ago by
c_u
▴ 520
5
votes
10
replies
3.0k
views
How to use a downloaded BLAST database
blast
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
c_u
▴ 520
5
votes
8
replies
1.8k
views
How to make fasta manipulation more efficient
fasta
sequence
2.7 years ago by
c_u
▴ 520
1
vote
1
reply
679
views
Effect of unequal sample sizes on p-value
statistics
conceptual
updated 2.7 years ago by
German.M.Demidov
★ 2.9k • written 2.7 years ago by
c_u
▴ 520
2
votes
2
replies
734
views
Effect of different sample sizes on p-value
statistics
conceptual
2.7 years ago by
c_u
▴ 520
6
votes
4
replies
1.9k
views
How can read-count from BAM file be greater than than from fastq file?
rna-seq
updated 2.8 years ago by
i.sudbery
19k • written 2.8 years ago by
c_u
▴ 520
9
votes
10
replies
1.9k
views
How to use Poisson distribution to get meaningful expression counts?
statistics
rna-seq
updated 2.8 years ago by
i.sudbery
19k • written 2.8 years ago by
c_u
▴ 520
7
votes
9
replies
2.2k
views
[CONCEPTUAL] Mutant analysis - should the t-test be paired or unpaired?
statistics
conceptual
updated 2.9 years ago by
German.M.Demidov
★ 2.9k • written 2.9 years ago by
c_u
▴ 520
5
votes
6
replies
3.0k
views
Stringie output doesn't have any gene names!
stringtie
RNA-Seq
updated 3.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 4.6 years ago by
c_u
▴ 520
3
votes
3
replies
938
views
Code/Tool to locally do sequence alignment
sequencing
alignment
updated 3.7 years ago by
wulj2
▴ 50 • written 3.7 years ago by
c_u
▴ 520
5
votes
5
replies
1.4k
views
Basic question about using ./configure for installing a software
installation
jellyfish
updated 4.0 years ago by
Biostar
20 • written 5.1 years ago by
c_u
▴ 520
18
votes
10
replies
5.4k
views
Should I normalize read counts if I want to run plotPCA?
RNA-Seq
updated 8 weeks ago by
ella
• 0 • written 4.0 years ago by
c_u
▴ 520
9
votes
7
replies
1.9k
views
Can I use DESeq2 for non-coding RNA?
RNA-Seq
DESeq2
noncoding
updated 4.2 years ago by
colin.kern
★ 1.1k • written 4.2 years ago by
c_u
▴ 520
3
votes
3
replies
1.0k
views
Can fusion transcript softwares distinguish between gene-fusions and transcript-fusions?
RNA-Seq
Fusion
4.2 years ago by
c_u
▴ 520
5
votes
8
replies
1.2k
views
How to perform transcriptomic clustering to find bad samples?
RNA-Seq
transcriptome
4.2 years ago by
c_u
▴ 520
0
votes
1
reply
3.5k
views
Rename samples for plotting using plotPCA
RNA-Seq
DESeq2
4.2 years ago by
c_u
▴ 520
7
votes
7
replies
1.5k
views
Suggestion needed for finding fusion transcripts
RNA-Seq
fusion-transcripts
4.3 years ago by
c_u
▴ 520
5
votes
9
replies
2.3k
views
Program to find genes up/down-regulated by a given gene
geo
upregulated
gene
downregulated
updated 13 months ago by
Ram
43k • written 9.2 years ago by
c_u
▴ 520
3
votes
5
replies
3.1k
views
tximport output should be integer values, IS NOT.
RNA-Seq
stringtie
4.4 years ago by
c_u
▴ 520
11
votes
6
replies
2.6k
views
Is this a good way to find non-coding transcripts from stranded RNA-seq data?
RNA-Seq
assembly
updated 4.5 years ago by
padwalmk
▴ 140 • written 4.5 years ago by
c_u
▴ 520
16
votes
15
replies
14k
views
How to perform strand-aware (RNA-Seq) mapping using STAR?
RNA-Seq
4.5 years ago by
c_u
▴ 520
20
votes
4
replies
7.7k
views
Difference between abundance and counts in RNA-Seq
RNA-Seq
tximport
4.5 years ago by
c_u
▴ 520
7
votes
3
replies
4.6k
views
Why run FeatureCounts after Stringtie? (Galaxy recommends!)
RNA-Seq
updated 4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 4.7 years ago by
c_u
▴ 520
1
vote
2
replies
3.2k
views
How do you find novel transcripts using GFFcompare?
RNA-Seq
gffcompare
4.8 years ago by
c_u
▴ 520
17
votes
13
replies
3.3k
views
Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcriptome?
RNA-Seq
4.8 years ago by
c_u
▴ 520
8
votes
3
replies
1.1k
views
Measure expression level of a single (novel) transcript in multiple fastq files
RNA-Seq
4.9 years ago by
c_u
▴ 520
8
votes
6
replies
1.1k
views
How to find read count for a newly discovered transcript
RNA-Seq
trinity
5.1 years ago by
c_u
▴ 520
5
votes
5
replies
5.6k
views
Extract R1 and R2 bam files from merged bam file
RNA-Seq
samtools
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
c_u
▴ 520
4
votes
4
replies
1.7k
views
Why does this samtools command work?
RNA-Seq
samtools
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
c_u
▴ 520
0
votes
0
replies
1.1k
views
Can we look at interactions between host genome and pathogen genome from Hi-C data?
genome
genomics
human genome
interactions
5.9 years ago by
c_u
▴ 520
3
votes
5
replies
1.5k
views
Finding restriction sites when the gene is on the negative strand
dna
rna
strand
updated 6.0 years ago by
Anima Mundi
★ 2.9k • written 6.0 years ago by
c_u
▴ 520
4
votes
6
replies
1.5k
views
Is there gold standard data for ancestral reconstruction?
phylogenetics
evolution
protein
gene
updated 6.0 years ago by
Jean-Karim Heriche
27k • written 6.0 years ago by
c_u
▴ 520
2
votes
3
replies
2.8k
views
GTF2BED does not provide meaningful output?
gtf
bed
RNA-Seq
updated 6.4 years ago by
Alex Reynolds
35k • written 6.4 years ago by
c_u
▴ 520
8
votes
10
replies
3.5k
views
How to get a list of all ribosomal genes in Rat?
RNA-Seq
rat
gene-list
updated 6.4 years ago by
lshepard
▴ 470 • written 6.4 years ago by
c_u
▴ 520
2
votes
12
replies
4.3k
views
Finding over-represented sequences in fastq file
RNA-Seq
fastq
6.5 years ago by
c_u
▴ 520
12
votes
5
replies
9.7k
views
Extracting 5'UTR and 3'UTR bed files from gtf file
rna
RNA-Seq
gtf
bed
updated 6.5 years ago by
Robert Sicko
▴ 630 • written 6.5 years ago by
c_u
▴ 520
5
votes
10
replies
1.8k
views
Low mapped percentage. How to know if data is junk?
RNA-Seq
tophat
6.5 years ago by
c_u
▴ 520
5
votes
5
replies
5.0k
views
Doing GSEA analysis on a set of genes
RNA-Seq
gsea
enrichment
updated 6.5 years ago by
EagleEye
7.5k • written 6.5 years ago by
c_u
▴ 520
4
votes
2
replies
1.9k
views
Finding RNA sequences for a list of genes
rna
RNA-Seq
list
genes
6.5 years ago by
c_u
▴ 520
5
votes
2
replies
1.9k
views
Where to find a list of rat protein coding genes?
rat
genome
gene-list
6.6 years ago by
c_u
▴ 520
7
votes
1
reply
4.2k
views
Do I need to merge bai files also, while merging bam files
bam
RNA-Seq
updated 6.6 years ago by
Gabriel R.
★ 2.9k • written 6.6 years ago by
c_u
▴ 520
1
vote
2
replies
2.7k
views
Error in creating a volcano plot in MATLAB
matlab
RNA-Seq
plot
6.6 years ago by
c_u
▴ 520
0
votes
4
replies
1.8k
views
SRAtoolkit: error while running sam-dump
SRA
sratoolkit
ncbi
sam
6.6 years ago by
c_u
▴ 520
6
votes
3
replies
1.6k
views
Is it possible to search Pubmed articles for a specific organism?
pubmed
search
updated 7.0 years ago by
Jake Warner
▴ 830 • written 7.0 years ago by
c_u
▴ 520
45 results • Page
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