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Comment: Comment: Is the "ChIPseek" the online tool for ChIP data analysis not working?
21 months ago by s.singh ▴ 70
3
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3
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758
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Is the "ChIPseek" the online tool for ChIP data analysis not working?
ChIPseek ChIP
21 months ago by s.singh ▴ 70
0
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1
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1.3k
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Comment: Comment: Can we get an Average Profile of ChIP peaks binding to Transcription "START and
2.0 years ago by s.singh ▴ 70
0
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1
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1.3k
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Comment: Comment: Can we get an Average Profile of ChIP peaks binding to Transcription "START and
2.0 years ago by s.singh ▴ 70
1
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5
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1.3k
views
Can we get an Average Profile of ChIP peaks binding to Transcription "START and STOP site" both in a single plot?
ChIPseeker
updated 2.0 years ago by 8.7k • written 2.0 years ago by ▴ 70
0
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977
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Comment: Comment: How to resolve the error which I get when I try to make objects for GRanges.
2.1 years ago by s.singh ▴ 70
0
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0
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977
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Comment: Comment: How to resolve the error which I get when I try to make objects for GRanges.
2.1 years ago by s.singh ▴ 70
0
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1
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977
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Comment: Comment: How to resolve the error which I get when I try to make objects for GRanges.
2.1 years ago by s.singh ▴ 70
1
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6
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977
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How to resolve the error which I get when I try to make objects for GRanges.
ChIPseeker GRanges
updated 2.1 years ago by 4.6k • written 2.1 years ago by ▴ 70
0
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0
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555
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How to compare the peaks called by MACS2 with the peaks called by ChIPOTLe?
ChIP histone MACS2 ChIPseq ChIPOTLe
2.5 years ago by s.singh ▴ 70
0
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0
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504
views
How to convert HTSeq raw read counts to FPKMs?
HTSeq countToFPKM counts FPKM read
2.5 years ago by s.singh ▴ 70
2
votes
1
reply
690
views
Does HTSEQ output include non-coding genes also?
htseq rnaseq ngs c.elegans worms
updated 3.4 years ago by 47k • written 3.4 years ago by ▴ 70
0
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0
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1.0k
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Comment: C: Where to find reference gene model for C. elegans to compute FPKM using RseQC?
3.8 years ago by s.singh ▴ 70
1
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2
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1.0k
views
Where to find reference gene model for C. elegans to compute FPKM using RseQC?
RSeQC RNAseq next-gen
3.8 years ago by s.singh ▴ 70
0
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0
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987
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Comment: C: ChIP-seq technical replicates giving very different percentage mapping score. Is
3.9 years ago by s.singh ▴ 70
0
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2
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987
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ChIP-seq technical replicates giving very different percentage mapping score. Is it normal?
ChIP ChIPseq bowtie next-gen sequencing
3.9 years ago by s.singh ▴ 70
0
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0
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13k
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Comment: C: How does samtools markdup works?
4.3 years ago by s.singh ▴ 70
22
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4
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13k
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How does samtools markdup works?
samtools markdup
updated 19 months ago by 43k • written 4.3 years ago by ▴ 70
0
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1
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1.5k
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Comment: C: To fetch the reads which are being partially mapped to the genome
5.5 years ago by s.singh ▴ 70
0
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0
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1.5k
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Comment: C: To fetch the reads which are being partially mapped to the genome
updated 5.5 years ago by 142k • written 5.5 years ago by ▴ 70
1
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5
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1.5k
views
To fetch the reads which are being partially mapped to the genome
RNA-Seq Bowtie2 HISAT2 STAR jvarkit
updated 5.5 years ago by 142k • written 5.5 years ago by ▴ 70
0
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0
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2.9k
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Comment: C: Is it possible to visualize ChIP peaks of three different samples in one plot us
5.5 years ago by s.singh ▴ 70
0
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1
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2.9k
views
Comment: C: Is it possible to visualize ChIP peaks of three different samples in one plot us
5.6 years ago by s.singh ▴ 70
6
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6
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2.9k
views
Is it possible to visualize ChIP peaks of three different samples in one plot using ChIPseeker?
ChIP-Seq ChIPseeker bdg
updated 5.6 years ago by ▴ 240 • written 5.6 years ago by ▴ 70
0
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0
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2.9k
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Comment: C: Is it possible to visualize ChIP peaks of three different samples in one plot us
5.6 years ago by s.singh ▴ 70
0
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0
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3.2k
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Comment: C: Extraction of partially mapped reads from BAM
5.6 years ago by s.singh ▴ 70
0
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1
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3.2k
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Comment: C: Extraction of partially mapped reads from BAM
5.6 years ago by s.singh ▴ 70
0
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0
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1.5k
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Annotating chromatin interactions (interactions generated from HOMER)
Hi-C HOMER
7.1 years ago by s.singh ▴ 70
0
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0
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1.9k
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Annotating significant interactions of Hi-C data of Barley (Hordeum vulgare)
homer
7.3 years ago by s.singh ▴ 70
0
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1
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23k
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Comment: C: Combining The Paired Reads From Illumina Run
7.6 years ago by s.singh ▴ 70
0
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0
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8.2k
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Comment: C: Questions About Pair-End Reads Which Are Not Match For Bwa
7.6 years ago by s.singh ▴ 70
2
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1
reply
2.1k
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ChIP peak data set comparison
chipseekar ChIP-Seq
updated 7.7 years ago by ▴ 80 • written 7.7 years ago by ▴ 70
0
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1
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6.0k
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Answer: A: Peak annotation using ChIPseeker (bioconductor package)
7.8 years ago by s.singh ▴ 70
5
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12
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6.0k
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Peak annotation using ChIPseeker (bioconductor package)
ChIP-Seq
7.8 years ago by s.singh ▴ 70
0
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1
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6.0k
views
Answer: A: Peak annotation using ChIPseeker (bioconductor package)
7.8 years ago by s.singh ▴ 70
0
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2
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6.0k
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Comment: C: Peak annotation using ChIPseeker (bioconductor package)
7.8 years ago by s.singh ▴ 70
0
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1
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6.0k
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Comment: C: Peak annotation using ChIPseeker (bioconductor package)
7.8 years ago by s.singh ▴ 70
0
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0
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1.9k
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Comment: C: ChIP data analysis high binding sites
7.8 years ago by s.singh ▴ 70
4
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3
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1.9k
views
ChIP data analysis high binding sites
ChIP-Seq
7.8 years ago by s.singh ▴ 70
2
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1
reply
2.1k
views
cant find full annotated genomes of two strains of mouse (C57BL/6NJ and BALB/cJ)
sequence
updated 2.6 years ago by 43k • written 9.9 years ago by ▴ 70
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