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How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated 5 weeks ago by 161k • written 5 weeks ago by ▴ 100
2
votes
4
replies
423
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How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit prefetch
updated 5 weeks ago by 161k • written 5 weeks ago by ▴ 100
0
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1
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448
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Comment: Comment: Is there a reason why fastq files from SRAExplorer and SRAToolkit are different
9 weeks ago by biotrekker ▴ 100
0
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1
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448
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Comment: Comment: Is there a reason why fastq files from SRAExplorer and SRAToolkit are different
9 weeks ago by biotrekker ▴ 100
1
vote
5
replies
448
views
Is there a reason why fastq files from SRAExplorer and SRAToolkit are different sizes?
sraexplorer sratoolkit
updated 9 weeks ago by 142k • written 9 weeks ago by ▴ 100
0
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0
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578
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Comment: Comment: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
10 weeks ago by biotrekker ▴ 100
0
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2
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578
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Comment: Comment: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
10 weeks ago by biotrekker ▴ 100
2
votes
5
replies
578
views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scRNA-seq md5
updated 10 weeks ago by 82k • written 3 months ago by ▴ 100
0
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0
replies
728
views
Comment: Comment: Error with fastq file corruption when downloading from SRA explorer using SLURM
4 months ago by biotrekker ▴ 100
2
votes
6
replies
728
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Error with fastq file corruption when downloading from SRA explorer using SLURM job
SRAExplorer corruption rna-seq SLURM
4 months ago by biotrekker ▴ 100
4
votes
4
replies
856
views
How to combine different "groups" in DESeq2 constrast
rnaseq DESeq2
updated 14 months ago by 14k • written 14 months ago by ▴ 100
0
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1
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856
views
Comment: Comment: How to combine different "groups" in DESeq2 constrast
14 months ago by biotrekker ▴ 100
7
votes
1
reply
1.2k
views
How to use filterbyExpr with DESeq2?
DESeq2 RNA-seq edgeR
updated 14 months ago by 43k • written 14 months ago by ▴ 100
5
votes
2
replies
1.2k
views
How do I go from TPM to PCA (rna-seq)?
pca rnaseq tpm
updated 15 months ago by 82k • written 15 months ago by ▴ 100
0
votes
1
reply
419
views
How do I use tximport to annotate using ensemble annotation on GRCh37.75?
tximport ensemble annotation
updated 15 months ago by 82k • written 15 months ago by ▴ 100
0
votes
1
reply
750
views
What is the best way to process a metadata file that SEURAT can read?
metadata scRNAseq seurat
updated 20 months ago by ★ 1.6k • written 20 months ago by ▴ 100
1
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1
reply
2.5k
views
Comment: Comment: Analyzing single cell RNA seq with multiple samples and conditions
20 months ago by biotrekker ▴ 100
12
votes
3
replies
2.5k
views
Analyzing single cell RNA seq with multiple samples and conditions
cell merge single seurat scRNAseq
20 months ago by biotrekker ▴ 100
1
vote
1
reply
1.2k
views
Need some help with next steps after getting fGSEA results from Microarray data.
microarray differential expression analysis fGSEA
updated 2.8 years ago by ▴ 20 • written 3.6 years ago by ▴ 100
40
votes
24
replies
3.9k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 14 months ago by 43k • written 3.3 years ago by ▴ 100
0
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0
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719
views
I am having trouble running tmodhg with ECC library?
tmodhg microarray analysis
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 100
1
vote
2
replies
978
views
I am having trouble downloading msigdb_v7.2.xml
msigdb
updated 3.5 years ago by 142k • written 3.5 years ago by ▴ 100
0
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0
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978
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Comment: C: I am having trouble downloading msigdb_v7.2.xml
3.5 years ago by biotrekker ▴ 100
1
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1
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2.7k
views
Answer: A: Getting error when using lmfit (LIMMA) for Microarray data analysis
3.7 years ago by biotrekker ▴ 100
4
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23
replies
2.7k
views
Getting error when using lmfit (LIMMA) for Microarray data analysis
R Microarray LIMMA
3.7 years ago by biotrekker ▴ 100
0
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1
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2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 3.7 years ago by 82k • written 3.7 years ago by ▴ 100
0
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2
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2.7k
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Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
3.7 years ago by biotrekker ▴ 100
0
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1
reply
2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
3.7 years ago by biotrekker ▴ 100
0
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1
reply
2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
3.7 years ago by biotrekker ▴ 100
0
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1
reply
2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 3.7 years ago by 88k • written 3.7 years ago by ▴ 100
0
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1
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2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 3.7 years ago by 88k • written 3.7 years ago by ▴ 100
0
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1
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2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 3.7 years ago by 88k • written 3.7 years ago by ▴ 100
0
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1
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2.7k
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Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
3.7 years ago by biotrekker ▴ 100
0
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1
reply
2.7k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 3.7 years ago by 88k • written 3.7 years ago by ▴ 100
0
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1
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2.0k
views
Comment: C: Cannot get read.celfiles() method to work?
3.8 years ago by biotrekker ▴ 100
1
vote
3
replies
2.0k
views
Cannot get read.celfiles() method to work?
R Micoroarray Omics oligo ff
updated 3.0 years ago by 88k • written 3.8 years ago by ▴ 100
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