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14k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
8 days ago by Jalil Sharif ▴ 80
1
vote
3
replies
553
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differential gene expression gene names/id vs transcript id
volcano-plot
updated 10 months ago by 82k • written 10 months ago by ▴ 80
3
votes
3
replies
534
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DESeq2: "model matrix is not full rank"
deseq2
updated 10 months ago by 10k • written 10 months ago by ▴ 80
0
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0
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316
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extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
11 months ago by Jalil Sharif ▴ 80
0
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9
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1.5k
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Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated 11 months ago by ▴ 900 • written 11 months ago by ▴ 80
0
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0
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1.5k
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Comment: Comment: Intersecting transcriptome bam file with GTF file
11 months ago by Jalil Sharif ▴ 80
0
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1
reply
1.5k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
11 months ago by Jalil Sharif ▴ 80
0
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2
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1.5k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
11 months ago by Jalil Sharif ▴ 80
0
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0
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1.1k
views
Comment: Comment: samtools and Rsamtools in r
11 months ago by Jalil Sharif ▴ 80
0
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6
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1.1k
views
samtools and Rsamtools in r
samtools
updated 10 months ago by 43k • written 11 months ago by ▴ 80
0
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1
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1.1k
views
Comment: Comment: samtools and Rsamtools in r
11 months ago by Jalil Sharif ▴ 80
0
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0
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1.1k
views
Comment: Comment: samtools and Rsamtools in r
11 months ago by Jalil Sharif ▴ 80
6
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7
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984
views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated 12 months ago by 100k • written 12 months ago by ▴ 80
2
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0
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984
views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
12 months ago by Jalil Sharif ▴ 80
0
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0
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984
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Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
12 months ago by Jalil Sharif ▴ 80
0
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0
replies
845
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
13 months ago by Jalil Sharif ▴ 80
0
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1
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845
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Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
13 months ago by Jalil Sharif ▴ 80
2
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4
replies
845
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
13 months ago by Jalil Sharif ▴ 80
6
votes
12
replies
2.2k
views
6 follow
gtf2bed not converting to bed
bed gtf
updated 13 months ago by 8.6k • written 13 months ago by ▴ 80
0
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0
replies
2.2k
views
Comment: Comment: gtf2bed not converting to bed
13 months ago by Jalil Sharif ▴ 80
0
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0
replies
772
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
14 months ago by Jalil Sharif ▴ 80
3
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4
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772
views
Ensembl equivalent of refseq transcript fasta
ensembl transcriptome refseq
14 months ago by Jalil Sharif ▴ 80
0
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0
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772
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
14 months ago by Jalil Sharif ▴ 80
0
votes
1
reply
886
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short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
alignment read short
updated 15 months ago by 6.4k • written 15 months ago by ▴ 80
0
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0
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732
views
Comment: Comment: differential gene expression pipelines rnaflow vs rnaseq
15 months ago by Jalil Sharif ▴ 80
0
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2
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732
views
differential gene expression pipelines rnaflow vs rnaseq
differential expression gene
15 months ago by Jalil Sharif ▴ 80
0
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0
replies
401
views
bowtie2 code to bwa-mem2
bwa-mem2 bowtie2
16 months ago by Jalil Sharif ▴ 80
1
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1
reply
1.3k
views
Extracting Beta, SE and P-Value from GLM model
beta glm r
updated 21 months ago by 3.9k • written 21 months ago by ▴ 80
0
votes
1
reply
426
views
Annotation SNP's with their Gene names
Gene annotations
updated 23 months ago by 2.8k • written 23 months ago by ▴ 80
0
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0
replies
407
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PLINK - PRS/GRS .fam file has fewer tokens
plink fam PRS
updated 13 months ago by 43k • written 2.1 years ago by ▴ 80
0
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0
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824
views
Comment: Comment: How to find top-hit SNP from gwas.
2.2 years ago by Jalil Sharif ▴ 80
1
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3
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824
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How to find top-hit SNP from gwas.
SNP GWAS tophits
2.2 years ago by Jalil Sharif ▴ 80
0
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1
reply
2.5k
views
Comment: Comment: Clumping error Plink
2.3 years ago by Jalil Sharif ▴ 80
0
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3
replies
2.5k
views
Clumping error Plink
clumping plink biobank uk
updated 2.3 years ago by ★ 4.7k • written 2.3 years ago by ▴ 80
0
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0
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961
views
Comment: Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
2.3 years ago by Jalil Sharif ▴ 80
0
votes
2
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961
views
UK Biobank difference in number of patients diagnosed in field 41270 vs extracted phenotypes.
Field Diagnosis UK Biobank
2.3 years ago by Jalil Sharif ▴ 80
0
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0
replies
1.2k
views
Comment: Comment: Averaging across multiple columns
2.4 years ago by Jalil Sharif ▴ 80
2
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1
reply
1.2k
views
Answer: Answer: Averaging across multiple columns
2.4 years ago by Jalil Sharif ▴ 80
4
votes
5
replies
1.2k
views
Averaging across multiple columns
awk bash column
2.4 years ago by Jalil Sharif ▴ 80
3
votes
0
replies
6.6k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by Jalil Sharif ▴ 80
4
votes
6
replies
6.6k
views
merging multiple .bed /.bgen files uk biobank using plink
plink uk biobank merge-list
2.5 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.6k
views
Answer: Answer: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.6k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by Jalil Sharif ▴ 80
1
vote
15
replies
4.1k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK Biobank PRS
2.6 years ago by Jalil Sharif ▴ 80
0
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0
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4.1k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.1k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.1k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.1k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.1k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.1k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
53 results • Page 1 of 2
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