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0
votes
3
replies
354
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Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
4 days ago by mropri ▴ 150
0
votes
2
replies
281
views
Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
23 days ago by mropri ▴ 150
0
votes
2
replies
305
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
4 weeks ago by mropri ▴ 150
0
votes
2
replies
2.3k
views
ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 12 weeks ago by 43k • written 3.9 years ago by ▴ 150
0
votes
2
replies
594
views
Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 3 months ago by 43k • written 4 months ago by ▴ 150
0
votes
0
replies
199
views
Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 4 months ago by 43k • written 4 months ago by ▴ 150
0
votes
2
replies
574
views
Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
4 months ago by mropri ▴ 150
0
votes
0
replies
277
views
Check if BAMboozle anonymized bam files
BAMboozle
10 months ago by mropri ▴ 150
0
votes
8
replies
965
views
BAMboozle
BAMboozle
12 months ago by mropri ▴ 150
0
votes
3
replies
814
views
Picard ribosome intervals list
Picard
12 months ago by mropri ▴ 150
0
votes
1
reply
1.2k
views
Cannot install limma
bioconductor limma
updated 13 months ago by ▴ 600 • written 13 months ago by ▴ 150
2
votes
6
replies
1.2k
views
Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
13 months ago by mropri ▴ 150
3
votes
2
replies
496
views
Power analysis for patient samples
RNA-seq
14 months ago by mropri ▴ 150
6
votes
6
replies
1.2k
views
Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
15 months ago by mropri ▴ 150
0
votes
6
replies
773
views
GO analysis where I can set by own set of genes to search against
Analysis GO
19 months ago by mropri ▴ 150
2
votes
5
replies
1.3k
views
Sabre demultiplexer
demultiplexing Sabre RNA-seq
updated 20 months ago by 142k • written 23 months ago by ▴ 150
0
votes
0
replies
418
views
Corr.test method
Correlation corr.test r
21 months ago by mropri ▴ 150
1
vote
4
replies
2.4k
views
Creating a script to run STAR alignment on multiple fastq files
RNA-seq STAR Alignment
23 months ago by mropri ▴ 150
0
votes
14
replies
2.0k
views
Corrplot heatmap crunched up and unreadable
Corrplot heatmap
23 months ago by mropri ▴ 150
2
votes
2
replies
679
views
Create a heatmap of only significant correlations
Correlation Protein expression heatmap
updated 23 months ago by 43k • written 23 months ago by ▴ 150
3
votes
2
replies
640
views
Filter Protein Expression Data
Filtering Proteomics
updated 23 months ago by 43k • written 23 months ago by ▴ 150
2
votes
3
replies
709
views
Impute protein expression matrix
Protein Impute Expression
updated 24 months ago by ▴ 910 • written 24 months ago by ▴ 150
5
votes
13
replies
3.4k
views
How to regress out age and sex using limma removeBatchEffect
removeBatchEffect expression data Limma
updated 10 months ago by ★ 7.2k • written 24 months ago by ▴ 150
1
vote
2
replies
1.2k
views
How to perform VST on my filtered counts data
RNA-seq transformation VST
updated 2.0 years ago by 14k • written 2.0 years ago by ▴ 150
0
votes
0
replies
456
views
Identical peak coverage in IP bam file and Input bam file
ChIP-Seq
2.7 years ago by mropri ▴ 150
0
votes
1
reply
955
views
ChIP QC
QC ChIP
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 150
2
votes
4
replies
2.1k
views
bedGraphToBigWig
Seq ChIP
updated 3.0 years ago by ★ 16k • written 3.0 years ago by ▴ 150
0
votes
12
replies
4.6k
views
DiffBind error when calling dba.count
ChIP-Seq
updated 3.3 years ago by • 0 • written 4.0 years ago by ▴ 150
5
votes
9
replies
2.9k
views
Error in read.table(file = file, header = header, sep = sep, quote = quote, : duplicate 'row.names' are not allowed
RNA-Seq R
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 150
12
votes
16
replies
1.6k
views
Error: SortDetails.cpp, 1111: Unable to create FILE* for temp file: No space left on device. Out of memory.
ChIP-Seq
updated 3.5 years ago by 35k • written 3.5 years ago by ▴ 150
6
votes
20
replies
2.1k
views
Use bedtools intersect to see how much coverage you had of a specific coordinate
ChIP-Seq
updated 3.5 years ago by 35k • written 3.5 years ago by ▴ 150
1
vote
3
replies
1.6k
views
Collapse two or thee bed files into one bed file using bedtools merge
ChIP-Seq
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 150
6
votes
7
replies
1.1k
views
Compare Super Enhancers in normal vs breast cancer cells
ChIP-Seq
updated 3.5 years ago by ★ 16k • written 3.5 years ago by ▴ 150
3
votes
5
replies
1.3k
views
Error: No Space left on device
rna-seq
updated 3.6 years ago by 142k • written 3.6 years ago by ▴ 150
0
votes
3
replies
859
views
Differential Gene Expression Using Deseq2
RNA-Seq
updated 3.7 years ago by ★ 1.4k • written 3.7 years ago by ▴ 150
2
votes
3
replies
1.2k
views
Filtering lncRNAs from total RNA
RNA-Seq
3.7 years ago by mropri ▴ 150
1
vote
4
replies
2.4k
views
Sicer peak calling
ChIP-Seq
updated 3.9 years ago by ★ 16k • written 3.9 years ago by ▴ 150
1
vote
4
replies
669
views
Copy column to another column in the same file
ChIP-Seq
updated 3.9 years ago by ★ 16k • written 3.9 years ago by ▴ 150
0
votes
3
replies
1.1k
views
Using genome tools to convert bed files to gff3 files
ChIP-Seq
updated 3.9 years ago by 8.6k • written 3.9 years ago by ▴ 150
0
votes
8
replies
1.8k
views
ROSE Algorithm: index out of range
ChIP-Seq
updated 7 months ago by 43k • written 3.9 years ago by ▴ 150
0
votes
4
replies
1.9k
views
ROSE Algorithm: Error when importing upper and join from string
ChIP-Seq
updated 3.9 years ago by ★ 16k • written 3.9 years ago by ▴ 150
0
votes
6
replies
2.1k
views
ChIP seq: Trying to use ChIPQC to measure quality of reads
ChIP-Seq
4.0 years ago by mropri ▴ 150
42 results • Page 1 of 1
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