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DiffBind reports no significant differentially enriched peaks
ChIP-seq DiffBind
updated 6 months ago by • 0 • written 18 months ago by ▴ 790
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1
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551
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Comment: Comment: Deseq2 colData for single condition
7 months ago by Marco Pannone ▴ 790
0
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0
replies
1.6k
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Comment: Comment: PolyA and PolyG sequences in FastQC/MultiQC report
8 months ago by Marco Pannone ▴ 790
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1
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630
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Comment: Comment: Heatmap ChIP-seq average signal
8 months ago by Marco Pannone ▴ 790
1
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3
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630
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Heatmap ChIP-seq average signal
chip-seq heatmap deeptools
updated 8 months ago by ★ 1.7k • written 8 months ago by ▴ 790
0
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0
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1.3k
views
Comment: Comment: Unusual pattern in heatmap from ChIP-seq
9 months ago by Marco Pannone ▴ 790
0
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1
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1.3k
views
Comment: Comment: Unusual pattern in heatmap from ChIP-seq
9 months ago by Marco Pannone ▴ 790
0
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1
reply
1.3k
views
Comment: Comment: Unusual pattern in heatmap from ChIP-seq
9 months ago by Marco Pannone ▴ 790
0
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0
replies
1.3k
views
Comment: Comment: Unusual pattern in heatmap from ChIP-seq
9 months ago by Marco Pannone ▴ 790
0
votes
1
reply
1.3k
views
Comment: Comment: Unusual pattern in heatmap from ChIP-seq
9 months ago by Marco Pannone ▴ 790
0
votes
1
reply
1.3k
views
Comment: Comment: Unusual pattern in heatmap from ChIP-seq
9 months ago by Marco Pannone ▴ 790
1
vote
13
replies
1.3k
views
Unusual pattern in heatmap from ChIP-seq
chip-seq heatmap deeptools
9 months ago by Marco Pannone ▴ 790
0
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1
reply
614
views
Comment: Comment: Extract gene coordinates UCSC Table Browser
9 months ago by Marco Pannone ▴ 790
0
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0
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614
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Comment: Comment: Extract gene coordinates UCSC Table Browser
9 months ago by Marco Pannone ▴ 790
0
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1
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614
views
Comment: Comment: Extract gene coordinates UCSC Table Browser
9 months ago by Marco Pannone ▴ 790
2
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6
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614
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Extract gene coordinates UCSC Table Browser
ucsc table browser
updated 9 months ago by 142k • written 9 months ago by ▴ 790
0
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0
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1.1k
views
Comment: Comment: Active enhancers for mm39
13 months ago by Marco Pannone ▴ 790
0
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1
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1.1k
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Comment: Comment: Active enhancers for mm39
13 months ago by Marco Pannone ▴ 790
4
votes
6
replies
1.1k
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Active enhancers for mm39
bed coordinates enhancers mm39
13 months ago by Marco Pannone ▴ 790
0
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1
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769
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
14 months ago by Marco Pannone ▴ 790
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1
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1.0k
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Comment: Comment: Merge common elements in R
14 months ago by Marco Pannone ▴ 790
2
votes
1
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407
views
Distribution of DEGs according to gene length
distribution RNA-seq
updated 14 months ago by 43k • written 14 months ago by ▴ 790
1
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1
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1.2k
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Comment: Comment: FPKM file differentilly gene anaylsis
17 months ago by Marco Pannone ▴ 790
2
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2
replies
631
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Statistic analysis on overlap between RNA-seq and ChIP-seq dataset
ChIP-seq RNA-seq
updated 17 months ago by 11k • written 17 months ago by ▴ 790
0
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1
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1.1k
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Comment: Comment: Any good tools for biological annotation of ChIP-seq broadpeak (H3K9me3, H3K27me
17 months ago by Marco Pannone ▴ 790
0
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1
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1.1k
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Comment: Comment: upload sc rna seq file into R
18 months ago by Marco Pannone ▴ 790
0
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1
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2.3k
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Comment: Comment: DeSeq2 "some values in assay are negative"
18 months ago by Marco Pannone ▴ 790
1
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0
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723
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Comment: Comment: Quantifying Peak Height Difference in ATAC-seq
18 months ago by Marco Pannone ▴ 790
0
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1
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2.3k
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Comment: Comment: DeSeq2 "some values in assay are negative"
18 months ago by Marco Pannone ▴ 790
0
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1
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720
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Comment: Comment: minimum number of genes - gene ontology/reactome analysis
18 months ago by Marco Pannone ▴ 790
0
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1
reply
2.3k
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Comment: Comment: DeSeq2 "some values in assay are negative"
18 months ago by Marco Pannone ▴ 790
0
votes
1
reply
720
views
Comment: Comment: minimum number of genes - gene ontology/reactome analysis
18 months ago by Marco Pannone ▴ 790
2
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2
replies
1.3k
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Answer: Answer: Multimapped reads in STAR alignment and subread::featureCounts()
18 months ago by Marco Pannone ▴ 790
0
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0
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377
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Comment: Comment: Get pathways containing input genes; Reactome Database
18 months ago by Marco Pannone ▴ 790
1
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0
replies
579
views
Comment: Comment: Convert ENSEMBL peak coordinates to the UCSC
18 months ago by Marco Pannone ▴ 790
1
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1
reply
1.0k
views
Comment: Comment: DESeq2 calculate mean for each genotype
18 months ago by Marco Pannone ▴ 790
2
votes
1
reply
801
views
Comment: Comment: How can I create a ciclo for in bash to merge each R1 fastq and R2 fastq in a si
18 months ago by Marco Pannone ▴ 790
0
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1
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2.7k
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Comment: Comment: HTSeq-Count: no_feature too high?
18 months ago by Marco Pannone ▴ 790
0
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0
replies
2.7k
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Comment: Comment: HTSeq-Count: no_feature too high?
18 months ago by Marco Pannone ▴ 790
0
votes
2
replies
2.7k
views
Comment: Comment: HTSeq-Count: no_feature too high?
18 months ago by Marco Pannone ▴ 790
0
votes
1
reply
2.7k
views
Comment: Comment: HTSeq-Count: no_feature too high?
18 months ago by Marco Pannone ▴ 790
2
votes
0
replies
1.9k
views
Comment: Comment: Should I merge my technical replicates for bulk RNA seq?
18 months ago by Marco Pannone ▴ 790
2
votes
3
replies
903
views
Answer: Answer: Hisat2 doesn't map to all chomosomes
18 months ago by Marco Pannone ▴ 790
1
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1
reply
954
views
Comment: Comment: Interpreting GSEA results (Plots)?
18 months ago by Marco Pannone ▴ 790
0
votes
0
replies
499
views
Comment: Comment: HTseq error and 0kb output file
18 months ago by Marco Pannone ▴ 790
0
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1
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721
views
Comment: Comment: How to find DEG with deseq2 in R
18 months ago by Marco Pannone ▴ 790
1
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0
replies
793
views
Comment: Comment: Venn Diagram output is missing
18 months ago by Marco Pannone ▴ 790
0
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1
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845
views
Comment: Comment: Change window size in wiggle file.
18 months ago by Marco Pannone ▴ 790
0
votes
0
replies
993
views
Comment: Comment: Handling Multiple Sequencing Runs in scRNA-seq
18 months ago by Marco Pannone ▴ 790
0
votes
1
reply
845
views
Answer: Answer: Change window size in wiggle file.
18 months ago by Marco Pannone ▴ 790
194 results • Page 1 of 4
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