Distribution of DEGs according to gene length
Hey everybody
I have an RNA-seq dataset that I used to identify DEGs.
I want to explore the distribution of DEGs related to gene length. For example, I would like to see if the identified DEGs have a skewed distribution towards smaller or longer genes.
What approach would you suggest?
Thanks in advance!
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Ram
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written
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Marco Pannone •
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Marco Pannone •
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Check the goseq package (Bioconductor) which implements computation of a gene length bias vector and associated plot. Page 8 of the manual https://bioconductor.org/packages/release/bioc/vignettes/goseq/inst/doc/goseq.pdf