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Answer: Answer: Error: ##fileformat=VCFv4.2 does not exist
14 months ago by sbstevenlee ▴ 480
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1.9k
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Comment: Comment: 012 matrix variation for multiple alleles
16 months ago by sbstevenlee ▴ 480
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1
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1.9k
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Comment: Comment: 012 matrix variation for multiple alleles
16 months ago by sbstevenlee ▴ 480
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1.9k
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Comment: Comment: 012 matrix variation for multiple alleles
16 months ago by sbstevenlee ▴ 480
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2
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1.9k
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Comment: Comment: 012 matrix variation for multiple alleles
16 months ago by sbstevenlee ▴ 480
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2.3k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
19 months ago by sbstevenlee ▴ 480
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1.3k
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Answer: Answer: Generating Depth of Coverage files from vcf.
20 months ago by sbstevenlee ▴ 480
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2
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2.4k
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Comment: Comment: Why isn't GWAS used in oncology?
20 months ago by sbstevenlee ▴ 480
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2.3k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
20 months ago by sbstevenlee ▴ 480
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1
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2.3k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
21 months ago by sbstevenlee ▴ 480
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1
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2.3k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
21 months ago by sbstevenlee ▴ 480
1
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1
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2.3k
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Answer: Answer: Calling star alleles with PGx-POP on my VCF file
21 months ago by sbstevenlee ▴ 480
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1.2k
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
23 months ago by sbstevenlee ▴ 480
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1
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1.2k
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
23 months ago by sbstevenlee ▴ 480
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0
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1.2k
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
23 months ago by sbstevenlee ▴ 480
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6
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1.2k
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If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling bam vcf bcftools fasta
23 months ago by sbstevenlee ▴ 480
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0
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1.3k
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Answer: Answer: Missing data per site
24 months ago by sbstevenlee ▴ 480
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1
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736
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Comment: Comment: Hierarchical clustering in r
2.0 years ago by sbstevenlee ▴ 480
2
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2
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1.4k
views
Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
bcftools mpileup
updated 10 months ago by 43k • written 2.1 years ago by ▴ 480
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Answer: Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
2.1 years ago by sbstevenlee ▴ 480
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0
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1.1k
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Answer: Answer: Vcf : remove variant absent in affected sample
2.1 years ago by sbstevenlee ▴ 480
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1
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3.4k
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Answer: Answer: BCFtools allele frequency for specific population
2.1 years ago by sbstevenlee ▴ 480
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4.7k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.1 years ago by sbstevenlee ▴ 480
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2.2k
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Comment: Comment: Need help to read samples from PyVCF
2.2 years ago by sbstevenlee ▴ 480
2
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1
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2.2k
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Answer: Answer: Need help to read samples from PyVCF
2.2 years ago by sbstevenlee ▴ 480
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650
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Answer: Answer: vcf file per-sample comparison in a region
2.2 years ago by sbstevenlee ▴ 480
2
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1
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1.4k
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Answer: Answer: Strange error when using gzip.open with a VCF file
2.2 years ago by sbstevenlee ▴ 480
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1
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5.6k
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Comment: Comment: convert csv file to bed file
2.2 years ago by sbstevenlee ▴ 480
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1
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5.6k
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Comment: Comment: convert csv file to bed file
2.2 years ago by sbstevenlee ▴ 480
1
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1
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5.6k
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Answer: Answer: convert csv file to bed file
2.2 years ago by sbstevenlee ▴ 480
2
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1
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727
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Answer: Answer: Understanding haplotype notations (output from EAGLE2)
2.2 years ago by sbstevenlee ▴ 480
0
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0
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2.1k
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Comment: Comment: Germline variant calling from BAM without reference
2.2 years ago by sbstevenlee ▴ 480
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1
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2.1k
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Comment: Comment: Germline variant calling from BAM without reference
2.2 years ago by sbstevenlee ▴ 480
1
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4
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2.1k
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Germline variant calling from BAM without reference
vcf calling bam variant
2.2 years ago by sbstevenlee ▴ 480
1
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1
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1.5k
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Answer: Answer: VCF using Python
2.3 years ago by sbstevenlee ▴ 480
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1.7k
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Answer: Answer: Finding variants common to subset of samples in multi-sample VCF
2.3 years ago by sbstevenlee ▴ 480
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0
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3.2k
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Comment: Comment: Aspera Connect problem with "ascp: Taget address not available"
2.3 years ago by sbstevenlee ▴ 480
1
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2
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3.2k
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Aspera Connect problem with "ascp: Taget address not available"
ascp Aspera
2.3 years ago by sbstevenlee ▴ 480
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0
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4.9k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
2.3 years ago by sbstevenlee ▴ 480
0
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1
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4.9k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
2.3 years ago by sbstevenlee ▴ 480
2
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1
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1.9k
views
Answer: Answer: 012 matrix variation for multiple alleles
2.3 years ago by sbstevenlee ▴ 480
1
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2
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1.4k
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Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 480
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1.4k
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Answer: Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
2.3 years ago by sbstevenlee ▴ 480
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0
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1.2k
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Answer: Answer: vcftools 012 apparently is giving me wrong genotypes
2.4 years ago by sbstevenlee ▴ 480
2
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0
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2.8k
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Answer: Answer: struggling in using bcftools to set variants to missing
2.4 years ago by sbstevenlee ▴ 480
0
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0
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1.1k
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Answer: Answer: Shared variants
2.4 years ago by sbstevenlee ▴ 480
0
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0
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685
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Answer: Answer: How to find differentially mutated genes between two groups of samples?
2.4 years ago by sbstevenlee ▴ 480
2
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1
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1.7k
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Answer: Answer: Alelle frequency plot
2.4 years ago by sbstevenlee ▴ 480
0
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0
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796
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Answer: Answer: fuc.pyvcf Attribute Error
2.4 years ago by sbstevenlee ▴ 480
0
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0
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10.0k
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Answer: Answer: How to filter a VCF file with a list of CHR or contig IDs?
2.5 years ago by sbstevenlee ▴ 480
99 results • Page 1 of 2
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