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questions
0
votes
2
replies
272
views
Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
Python
Snakemake
3 months ago by
blackadder
▴ 30
12
votes
6
replies
883
views
Problematic fastq files...How can we trust them?
fastq
5 months ago by
blackadder
▴ 30
6
votes
3
replies
483
views
BBDuk error: with these 4 lines....
BBDUK
trimming
java
5 months ago by
blackadder
▴ 30
3
votes
8
replies
1.1k
views
Best command line tool for downloading sequencing reads
enaBrowserTools
reads
Fasterq-dump
sequencing
updated 7 months ago by
ATpoint
82k • written 7 months ago by
blackadder
▴ 30
1
vote
0
replies
371
views
Snakemake cluster status script for qsub
snakemake
cluster
updated 11 months ago by
Ram
43k • written 11 months ago by
blackadder
▴ 30
0
votes
1
reply
638
views
Snakemake benchmark error
snakemake
benchmark
updated 16 months ago by
Jeremy Leipzig
22k • written 16 months ago by
blackadder
▴ 30
4
votes
5
replies
868
views
Get middle part of a url
Unix
bash
updated 22 months ago by
Joe
21k • written 22 months ago by
blackadder
▴ 30
0
votes
3
replies
1.0k
views
Snakemake cluster execution error
snakemake
cluster
conda
updated 23 months ago by
Ram
43k • written 23 months ago by
blackadder
▴ 30
2
votes
5
replies
756
views
Get bulk ftp links from ENA
ENA
ftp
assembly
fasta
23 months ago by
blackadder
▴ 30
8
votes
11
replies
1.4k
views
How to remove everything before a specific character in a column
unix
bash
awk
sed
updated 2.1 years ago by
GenoMax
142k • written 2.1 years ago by
blackadder
▴ 30
4
votes
10
replies
1.6k
views
How to match 2 columns from 2 different tsv files?
bash
unix
pattern-matching
updated 2.1 years ago by
Ram
43k • written 2.1 years ago by
blackadder
▴ 30
3
votes
2
replies
963
views
Can I execute a snakemake rule only once?
Snakemake
GTDB-TK
Kraken2
2.3 years ago by
blackadder
▴ 30
4
votes
11
replies
4.5k
views
Is it possible to pass command line arguments to python script in snakemake?
snakemake
python
updated 22 months ago by
Ecstasia
• 0 • written 2.3 years ago by
blackadder
▴ 30
3
votes
5
replies
2.1k
views
Snakemake command line arguments
Snakemake
updated 2.4 years ago by
Eric Lim
★ 2.1k • written 2.4 years ago by
blackadder
▴ 30
2
votes
17
replies
2.9k
views
Snakemake Megahit error
megahit
Snakemake
2.5 years ago by
blackadder
▴ 30
3
votes
1
reply
1.4k
views
How can I load numerous files from a config file in Snakemake? Is it worth it ?
Snakemake
updated 2.5 years ago by
seidel
11k • written 2.5 years ago by
blackadder
▴ 30
3
votes
1
reply
1.3k
views
Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
vg
variation graph
vgteam
updated 4.5 years ago by
Jouni Sirén
▴ 360 • written 4.5 years ago by
blackadder
▴ 30
17 results • Page
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