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comments
0
votes
0
replies
263
views
Comment:
Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
11 weeks ago by
blackadder
▴ 30
0
votes
2
replies
263
views
Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
Python
Snakemake
11 weeks ago by
blackadder
▴ 30
0
votes
0
replies
863
views
Comment:
Comment: Problematic fastq files...How can we trust them?
5 months ago by
blackadder
▴ 30
0
votes
2
replies
863
views
Comment:
Comment: Problematic fastq files...How can we trust them?
5 months ago by
blackadder
▴ 30
12
votes
6
replies
863
views
Problematic fastq files...How can we trust them?
fastq
5 months ago by
blackadder
▴ 30
0
votes
0
replies
473
views
Comment:
Comment: BBDuk error: with these 4 lines....
5 months ago by
blackadder
▴ 30
6
votes
3
replies
473
views
BBDuk error: with these 4 lines....
BBDUK
trimming
java
5 months ago by
blackadder
▴ 30
3
votes
8
replies
1.0k
views
Best command line tool for downloading sequencing reads
enaBrowserTools
reads
Fasterq-dump
sequencing
updated 6 months ago by
ATpoint
82k • written 6 months ago by
blackadder
▴ 30
0
votes
0
replies
1.0k
views
Comment:
Comment: Best command line tool for downloading sequencing reads
6 months ago by
blackadder
▴ 30
0
votes
0
replies
1.0k
views
Comment:
Comment: Best command line tool for downloading sequencing reads
6 months ago by
blackadder
▴ 30
0
votes
1
reply
1.0k
views
Comment:
Comment: Best command line tool for downloading sequencing reads
6 months ago by
blackadder
▴ 30
1
vote
0
replies
362
views
Snakemake cluster status script for qsub
snakemake
cluster
updated 10 months ago by
Ram
43k • written 10 months ago by
blackadder
▴ 30
0
votes
1
reply
632
views
Snakemake benchmark error
snakemake
benchmark
updated 15 months ago by
Jeremy Leipzig
22k • written 15 months ago by
blackadder
▴ 30
4
votes
5
replies
858
views
Get middle part of a url
Unix
bash
updated 22 months ago by
Joe
21k • written 22 months ago by
blackadder
▴ 30
0
votes
0
replies
858
views
Comment:
Comment: Get middle part of a url
22 months ago by
blackadder
▴ 30
0
votes
2
replies
858
views
Comment:
Comment: Get middle part of a url
22 months ago by
blackadder
▴ 30
0
votes
0
replies
1.0k
views
Comment:
Comment: Snakemake cluster execution error
22 months ago by
blackadder
▴ 30
0
votes
3
replies
1.0k
views
Snakemake cluster execution error
snakemake
cluster
conda
updated 22 months ago by
Ram
43k • written 22 months ago by
blackadder
▴ 30
0
votes
0
replies
747
views
Comment:
Comment: Get bulk ftp links from ENA
22 months ago by
blackadder
▴ 30
0
votes
1
reply
747
views
Comment:
Comment: Get bulk ftp links from ENA
22 months ago by
blackadder
▴ 30
2
votes
5
replies
747
views
Get bulk ftp links from ENA
ENA
ftp
assembly
fasta
22 months ago by
blackadder
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: How to remove everything before a specific character in a column
2.0 years ago by
blackadder
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: How to remove everything before a specific character in a column
2.0 years ago by
blackadder
▴ 30
8
votes
11
replies
1.3k
views
How to remove everything before a specific character in a column
unix
bash
awk
sed
updated 2.0 years ago by
GenoMax
142k • written 2.0 years ago by
blackadder
▴ 30
0
votes
0
replies
1.3k
views
Comment:
Comment: How to remove everything before a specific character in a column
2.0 years ago by
blackadder
▴ 30
0
votes
0
replies
1.3k
views
Comment:
Comment: How to remove everything before a specific character in a column
2.0 years ago by
blackadder
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: How to match 2 columns from 2 different tsv files?
2.0 years ago by
blackadder
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: How to match 2 columns from 2 different tsv files?
updated 2.0 years ago by
Ram
43k • written 2.0 years ago by
blackadder
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: How to match 2 columns from 2 different tsv files?
2.0 years ago by
blackadder
▴ 30
4
votes
10
replies
1.5k
views
How to match 2 columns from 2 different tsv files?
bash
unix
pattern-matching
updated 2.0 years ago by
Ram
43k • written 2.0 years ago by
blackadder
▴ 30
0
votes
0
replies
952
views
Comment:
Comment: Can I execute a snakemake rule only once?
2.3 years ago by
blackadder
▴ 30
3
votes
2
replies
952
views
Can I execute a snakemake rule only once?
Snakemake
GTDB-TK
Kraken2
2.3 years ago by
blackadder
▴ 30
4
votes
11
replies
4.5k
views
Is it possible to pass command line arguments to python script in snakemake?
snakemake
python
updated 22 months ago by
Ecstasia
• 0 • written 2.3 years ago by
blackadder
▴ 30
0
votes
0
replies
4.5k
views
Comment:
Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by
blackadder
▴ 30
0
votes
1
reply
4.5k
views
Comment:
Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by
blackadder
▴ 30
0
votes
1
reply
4.5k
views
Comment:
Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by
blackadder
▴ 30
0
votes
0
replies
4.5k
views
Comment:
Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by
blackadder
▴ 30
3
votes
5
replies
2.1k
views
Snakemake command line arguments
Snakemake
updated 2.3 years ago by
Eric Lim
★ 2.1k • written 2.3 years ago by
blackadder
▴ 30
0
votes
0
replies
2.1k
views
Comment:
Comment: Snakemake command line arguments
2.3 years ago by
blackadder
▴ 30
0
votes
0
replies
2.1k
views
Comment:
Comment: Snakemake command line arguments
2.3 years ago by
blackadder
▴ 30
0
votes
0
replies
2.9k
views
Comment:
Comment: Snakemake Megahit error
2.5 years ago by
blackadder
▴ 30
0
votes
2
replies
2.9k
views
Comment:
Comment: Snakemake Megahit error
2.5 years ago by
blackadder
▴ 30
0
votes
1
reply
2.9k
views
Comment:
Comment: Snakemake Megahit error
2.5 years ago by
blackadder
▴ 30
0
votes
1
reply
2.9k
views
Comment:
Comment: Snakemake Megahit error
2.5 years ago by
blackadder
▴ 30
0
votes
0
replies
2.9k
views
Comment:
Comment: Snakemake Megahit error
2.5 years ago by
blackadder
▴ 30
0
votes
1
reply
2.9k
views
Comment:
Comment: Snakemake Megahit error
2.5 years ago by
blackadder
▴ 30
2
votes
17
replies
2.9k
views
Snakemake Megahit error
megahit
Snakemake
2.5 years ago by
blackadder
▴ 30
3
votes
1
reply
1.4k
views
How can I load numerous files from a config file in Snakemake? Is it worth it ?
Snakemake
updated 2.5 years ago by
seidel
11k • written 2.5 years ago by
blackadder
▴ 30
3
votes
1
reply
1.3k
views
Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
vg
variation graph
vgteam
updated 4.4 years ago by
Jouni Sirén
▴ 360 • written 4.4 years ago by
blackadder
▴ 30
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