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Answer: Answer: Access to fastq files on SRA Run browser
8 months ago by xiaoguang ▴ 140
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0
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417
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Answer: Answer: Bar plot in R
8 months ago by xiaoguang ▴ 140
1
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0
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998
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Answer: Answer: Importance of Data Structures for Bioinformatics?
8 months ago by xiaoguang ▴ 140
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0
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530
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Answer: Answer: How to find positions with higher depth relative to their surroundings
8 months ago by xiaoguang ▴ 140
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1
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1.8k
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Comment: Comment: how to calculate BAF and LRR from VCF or BCF files?
8 months ago by xiaoguang ▴ 140
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4
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1.8k
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how to calculate BAF and LRR from VCF or BCF files?
SNP BAF LRR Variation
updated 7 months ago by • 0 • written 2.7 years ago by ▴ 140
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0
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2.3k
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Answer: Answer: structural comparison with TM score
11 months ago by xiaoguang ▴ 140
1
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0
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2.9k
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Answer: Answer: BAM to Fastq
2.5 years ago by xiaoguang ▴ 140
0
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2
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1.3k
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Comment: Comment: GATK command for mutect2
2.5 years ago by xiaoguang ▴ 140
0
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0
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670
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Get Allele specific copy number regions from WGS data using ASCAT?
CNV ASCAT specific Allele WGS
2.6 years ago by xiaoguang ▴ 140
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0
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1.1k
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Comment: Comment: Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
2.6 years ago by xiaoguang ▴ 140
1
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0
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4.1k
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Comment: Comment: What files (fasta, GTF) do I need for RNA seq analysis
2.6 years ago by xiaoguang ▴ 140
0
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1
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1.1k
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Answer: Answer: Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
2.6 years ago by xiaoguang ▴ 140
0
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0
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1.6k
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Answer: Answer: How to retrieve KO IDs for a list of genes?
2.8 years ago by xiaoguang ▴ 140
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0
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3.7k
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Answer: Answer: How do I detect deletions?
2.9 years ago by xiaoguang ▴ 140
0
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1
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1.6k
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Comment: C: Differential analysis isoform level or gene level ?
3.5 years ago by xiaoguang ▴ 140
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0
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912
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Comment: C: how to get the geneNames or bedfile from fasta sequences
3.5 years ago by xiaoguang ▴ 140
0
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0
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912
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Comment: C: how to get the geneNames or bedfile from fasta sequences
3.5 years ago by xiaoguang ▴ 140
1
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1
reply
912
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Comment: C: how to get the geneNames or bedfile from fasta sequences
3.5 years ago by xiaoguang ▴ 140
1
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0
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1.4k
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Comment: C: Filtering BAM files efficiently
3.5 years ago by xiaoguang ▴ 140
0
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1
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1.6k
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Comment: C: Differential analysis isoform level or gene level ?
3.5 years ago by xiaoguang ▴ 140
1
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0
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1.1k
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Answer: A: How to count the number of alignments in a bam file without using samtools?
3.5 years ago by xiaoguang ▴ 140
0
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1
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912
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Answer: A: how to get the geneNames or bedfile from fasta sequences
3.5 years ago by xiaoguang ▴ 140
2
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1
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2.0k
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Can I use the SCENIC package to analyze the transcription factors in the bulk RNAseq data?
rna-seq SCENIC
updated 4.2 years ago by 12k • written 4.2 years ago by ▴ 140
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0
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5.7k
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Comment: C: Open Source Mass Spec Search Engines?
4.2 years ago by xiaoguang ▴ 140
5
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4
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4.5k
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How to understand the multi-sample processing of Seurat?
RNA-Seq scRNAseq seurat
updated 4.2 years ago by 9.0k • written 4.3 years ago by ▴ 140
1
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1
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825
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how to plot this picture?
R circos
4.3 years ago by xiaoguang ▴ 140
0
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0
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872
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Comment: C: When using monocle3 to calculate the pseudo time of 170,000 cells, an error is r
4.4 years ago by xiaoguang ▴ 140
0
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2
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872
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When using monocle3 to calculate the pseudo time of 170,000 cells, an error is reported, and the error is *** caught segfault *** address 0x2b3ae695f…
scRNA
4.4 years ago by xiaoguang ▴ 140
0
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0
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2.1k
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How to calculate pseudo time for all cells with monocle3
scRNAseq monocle3
4.5 years ago by xiaoguang ▴ 140
1
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3
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1.7k
views
How to get an exact match from the bam alignment file
bam bwa samtools
updated 4.8 years ago by ▴ 20 • written 4.9 years ago by ▴ 140
4
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5
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3.2k
views
how to caculate effective length for RNA sequencing?
rna-seq RNA-Seq R
updated 4.8 years ago by ★ 7.2k • written 4.9 years ago by ▴ 140
22
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15
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12k
views
6 follow
How to normalized TPM with TMM method?
rna-seq edgeR TPM TMM
updated 2.2 years ago by ▴ 10 • written 4.9 years ago by ▴ 140
0
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2
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3.2k
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Comment: C: how to caculate effective length for RNA sequencing?
4.9 years ago by xiaoguang ▴ 140
0
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0
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3.1k
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Comment: C: proj_api.h not found in standard or given locations
4.9 years ago by xiaoguang ▴ 140
1
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2
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3.1k
views
proj_api.h not found in standard or given locations
R miniconda
updated 4.9 years ago by 11k • written 4.9 years ago by ▴ 140
36 results • Page 1 of 1
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