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Comment:
Comment: GTF file for HIV strain pNL4-3
9 weeks ago by
xiaoleiusc
▴ 140
1
vote
4
replies
400
views
How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation
RNA
updated 10 weeks ago by
Juke34
8.6k • written 10 weeks ago by
xiaoleiusc
▴ 140
0
votes
1
reply
13k
views
Comment:
Comment: Repeat masker bed file
10 weeks ago by
xiaoleiusc
▴ 140
0
votes
1
reply
400
views
Comment:
Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
10 weeks ago by
xiaoleiusc
▴ 140
0
votes
0
replies
11k
views
Comment:
Comment: cutadapt for trimming reads to specific length
11 weeks ago by
xiaoleiusc
▴ 140
0
votes
0
replies
11k
views
Comment:
Comment: cutadapt for trimming reads to specific length
11 weeks ago by
xiaoleiusc
▴ 140
0
votes
0
replies
19k
views
Comment:
Comment: Downloading gtf file for RefSeq
4 months ago by
xiaoleiusc
▴ 140
1
vote
0
replies
865
views
Comment:
Comment: Error message in Standalone BLAST
4 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
932
views
Answer:
Answer: IGV RNAseq- Splice junction
4 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
3.3k
views
Comment:
Comment: "Valid" names for paired-end reads
4 months ago by
xiaoleiusc
▴ 140
9
votes
6
replies
808
views
Search a read by its name in a big fastq.gz file
NGS
fastq
updated 4 months ago by
Ram
43k • written 4 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
1.5k
views
Comment:
Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
4 months ago by
xiaoleiusc
▴ 140
1
vote
0
replies
808
views
Comment:
Comment: Search a read by its name in a big fastq.gz file
4 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
18k
views
Comment:
Comment: Running STAR aligner on paired-end reads as single-end read
4 months ago by
xiaoleiusc
▴ 140
0
votes
1
reply
808
views
Comment:
Comment: Search a read by its name in a big fastq.gz file
4 months ago by
xiaoleiusc
▴ 140
0
votes
1
reply
3.7k
views
Comment:
Comment: Should I remove Kmers identified in FastQC?
5 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
3.9k
views
Comment:
Comment: Chimeric alignment with minimap2
6 months ago by
xiaoleiusc
▴ 140
0
votes
1
reply
865
views
Comment:
Comment: Error message in Standalone BLAST
6 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
7.7k
views
Comment:
Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
6 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
1.6k
views
Comment:
Comment: Star alignment - AS and MD tags
6 months ago by
xiaoleiusc
▴ 140
0
votes
2
replies
4.5k
views
Comment:
Comment: Is trimming necessary for RNAseq?
6 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
6.8k
views
Comment:
Comment: SE reads in fr-firststrand, fr-secondstrand
6 months ago by
xiaoleiusc
▴ 140
2
votes
1
reply
590
views
are transcripts in the Ensembl transcript release of human from certain cell types?
annotation
RNA-seq
updated 9 months ago by
manaswwm
▴ 510 • written 9 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
506
views
Comment:
Comment: multi-mapping reads settings in Rsubread or Rsubjunc
11 months ago by
xiaoleiusc
▴ 140
1
vote
2
replies
506
views
multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc
RNA-seq
11 months ago by
xiaoleiusc
▴ 140
1
vote
0
replies
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
15 months ago by
xiaoleiusc
▴ 140
0
votes
1
reply
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
15 months ago by
xiaoleiusc
▴ 140
0
votes
1
reply
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
21 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
1.8k
views
Answer:
Answer: Fastq reads mapped to the desired position on reference genome
updated 18 months ago by
Ram
43k • written 2.1 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
1.5k
views
Comment:
Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
1.5k
views
Comment:
Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
2.5 years ago by
xiaoleiusc
▴ 140
1
vote
5
replies
1.5k
views
Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python
RNA-seq
R
updated 15 months ago by
Ram
43k • written 2.5 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
5.8k
views
Comment:
Comment: How To Join Text Files By A Certain Column (Accession Id)
2.5 years ago by
xiaoleiusc
▴ 140
1
vote
1
reply
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
4.6k
views
Comment:
Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
63k
views
Comment:
Comment: Insert Size And Fragment Size ?
2.5 years ago by
xiaoleiusc
▴ 140
1
vote
1
reply
1.6k
views
Comment:
Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
25k
views
Comment:
Comment: Check if BAM is derived from pair-end or single-end reads?
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
1.6k
views
Comment:
Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by
xiaoleiusc
▴ 140
2
votes
6
replies
1.6k
views
calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 2.5 years ago by
Carlo Yague
8.7k • written 2.5 years ago by
xiaoleiusc
▴ 140
1
vote
0
replies
573
views
Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq
Database
Public
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
13k
views
Comment:
Comment: How to work out Z score for heatmaps for RNA seq dataset
2.6 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
13k
views
Comment:
Comment: How to work out Z score for heatmaps for RNA seq dataset
2.6 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
40k
views
Comment:
Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
2.6 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
4.6k
views
Comment:
Comment: Forge a BSgenome data package
2.6 years ago by
xiaoleiusc
▴ 140
0
votes
1
reply
2.2k
views
Comment:
Comment: Loading a genome in BSgenome
2.6 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
14k
views
Comment:
Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
2.5 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
14k
views
Comment:
Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
2.6 years ago by
xiaoleiusc
▴ 140
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