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0
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replies
239
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Removal of inverted repeat copy from chloroplast genome
sequence
2.2 years ago by Wilber0x ▴ 50
0
votes
1
reply
739
views
blastn cut off values
blast
updated 2.9 years ago by ▴ 160 • written 2.9 years ago by ▴ 50
6
votes
8
replies
1.3k
views
Joining blast hits together into single fasta sequence
sequence genomics blast
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 50
0
votes
1
reply
480
views
genomes from genbank showing extra annotations in benchling
genome sequence genbank
3.2 years ago by Wilber0x ▴ 50
2
votes
4
replies
961
views
Downloading specific gene sequences within a genome from genbank using biopython
gene sequence python
3.3 years ago by Wilber0x ▴ 50
5
votes
4
replies
1.3k
views
Running blast shell script within python pipeline
sequence blast biopython
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 50
0
votes
0
replies
427
views
Methods for quantifying state change in phylogeny- consistency index
sequence phylogenetics
3.3 years ago by Wilber0x ▴ 50
6
votes
10
replies
965
views
Biopython - AttributeError: when downloading from genbank
biopython software error
updated 3.5 years ago by ★ 1.4k • written 3.5 years ago by ▴ 50
0
votes
0
replies
669
views
Use mesquite to make a supertree
phylogeny phylogenetics genome alignment sequence
3.7 years ago by Wilber0x ▴ 50
0
votes
2
replies
964
views
Software to allow manual adding of branches to to phylogenetic tree
genome phylogenetics phylogeny evolution
updated 3.7 years ago by ★ 27k • written 3.7 years ago by ▴ 50
3
votes
1
reply
2.5k
views
RAxML generate best tree from 500 bootstrap trees
sequence phylogenetics raxml
updated 3.9 years ago by ▴ 230 • written 3.9 years ago by ▴ 50
0
votes
0
replies
972
views
truncate VCF files so they are same length
vcf SNP sequence genome
updated 4.4 years ago by 20 • written 4.6 years ago by ▴ 50
11
votes
3
replies
7.4k
views
alignment of multiple multifasta files- MAFFT command line
mafft alignment sequence
updated 4.5 years ago by 35k • written 4.5 years ago by ▴ 50
3
votes
3
replies
3.6k
views
HMMER installed with conda: no tutorial folder
HMMER genome alignment installation
updated 4.5 years ago by ▴ 60 • written 4.5 years ago by ▴ 50
0
votes
5
replies
2.9k
views
finding specific SNPs in VCF files
snp alignment gene next-gen genome
updated 4.7 years ago by ★ 3.8k • written 4.7 years ago by ▴ 50
0
votes
2
replies
1.5k
views
Decrease stringency of bowtie2
next-gen assembly sequence alignment
updated 4.8 years ago by 35k • written 4.8 years ago by ▴ 50
2
votes
2
replies
2.4k
views
Identifying unique SNPs between species
snp vcf alignment
updated 4.9 years ago by 16k • written 4.9 years ago by ▴ 50
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