blastn cut off values
I am using blast to search for genes present within plastid genomes. I am trying to work out what causes blast to find a hit
I am using blastn with completely default settings to find any matches. What are the parameters that determine when a match is found or not? I am not filtering by e-value, just using all the hits blastn returns.
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Confusing question.
First of all, where are you running blast? Against which databases?
Then,
That's literally one of the most well documented information of blast manual. Please, tell me you've read it.
And
W H Y ?