This is a test version of Biostars. For the public version, visit https://www.biostars.org.
BLAST parameters and explanation

What is a good hit in a blast mean ?? Which parameters should be taken in to account for calculatibg a good hit?? What if i get 78 hits while doibg a blastn or p search with evalue ranging from 0 to 98e-16 is it a good hit?? When i do a blastn or p search how will i know query sequence matches with the database...to be more specific with the help of what parameters and tools i confirm out that particular protein or nucleotide from the query sequence is present in the database... Please help..it might sound basic but the help will be really appreciated..

assembly gene alignment sequence genome

There is plenty of information available at NCBI's BLAST help page. You should go through the materials there. Then ask specific questions for things you have doubts about.

thank you for the reply it helped

yes u were right..it helped a lot

0 answers

No answers yet.

Log in to answer this question.