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questions
1
vote
9
replies
556
views
miRNA alignment with Bowtie2
bowtie2
7 weeks ago by
Chironex
▴ 40
0
votes
4
replies
419
views
merge regions into one bigger region
genomicranges
10 weeks ago by
Chironex
▴ 40
1
vote
5
replies
591
views
sam file error
samtools
3 months ago by
Chironex
▴ 40
0
votes
3
replies
479
views
Remove Uncharacterized chromosomes before alignment in chipseq
fasta
Bowtie2
updated 4 months ago by
ATpoint
82k • written 4 months ago by
Chironex
▴ 40
1
vote
3
replies
446
views
tool to find enhancer associated to gene list
r
updated 4 months ago by
ATpoint
82k • written 4 months ago by
Chironex
▴ 40
0
votes
0
replies
264
views
How to adjust scale on velocity plots
python
7 months ago by
Chironex
▴ 40
1
vote
3
replies
995
views
differences between trajectories in conditions with Monocle3 or other tools
trajectory
scRna-seq
monocle3
single-cell
updated 7 months ago by
Amitm
★ 2.2k • written 7 months ago by
Chironex
▴ 40
1
vote
4
replies
1.7k
views
best annotation approach for peaks
chipseeker
R
chippeakanno
updated 11 months ago by
rfran010
▴ 900 • written 12 months ago by
Chironex
▴ 40
5
votes
6
replies
790
views
normalize coordinates to the same length
r
genomicranges
13 months ago by
Chironex
▴ 40
0
votes
0
replies
415
views
retrieve peaks associated to a gene SIGNAC
single-cell
seurat
r
signac
updated 13 months ago by
Ram
43k • written 13 months ago by
Chironex
▴ 40
4
votes
5
replies
1.4k
views
extract gene coordinates and TSS from gene list
r
genomicranges
13 months ago by
Chironex
▴ 40
1
vote
4
replies
1.5k
views
normalize RNA seq pseudobulk after matrix creation
scRNA-seq
pseudobulk
r
single-cell
updated 5 months ago by
Ram
43k • written 14 months ago by
Chironex
▴ 40
0
votes
2
replies
637
views
change the axis scale in mds plot
r
14 months ago by
Chironex
▴ 40
1
vote
1
reply
480
views
tools that align sequences in mouse and human
r
updated 15 months ago by
dthorbur
★ 1.9k • written 15 months ago by
Chironex
▴ 40
4
votes
4
replies
1.5k
views
make volcano plot from multiple dataframes with same genes and different foldchanges
r
updated 16 months ago by
seidel
11k • written 16 months ago by
Chironex
▴ 40
4
votes
4
replies
717
views
random list of coordinates of different lengths
r
bedtools
19 months ago by
Chironex
▴ 40
2
votes
4
replies
2.6k
views
loom file for rna velocity
rnavelocity
scRNAseq
seurat
loom
19 months ago by
Chironex
▴ 40
0
votes
0
replies
743
views
Plotting genes that are co-expressed in featureplot eliminating color from cells expressing only one of the genes in Seurat
scRNAseq
seurat
20 months ago by
Chironex
▴ 40
0
votes
3
replies
1.3k
views
error running fgsea
gene
onthology
fgsea
updated 22 months ago by
ATpoint
82k • written 22 months ago by
Chironex
▴ 40
0
votes
0
replies
375
views
sva batch correction error
sva
r
rna-seq
2.0 years ago by
Chironex
▴ 40
0
votes
5
replies
1.2k
views
normalization with RPKM
normalization
RNA-Seq
data
rpkm
transposon
updated 4.4 years ago by
Biostar
20 • written 4.9 years ago by
Chironex
▴ 40
0
votes
1
reply
693
views
correlation between element-gene
r
correlation
4.6 years ago by
Chironex
▴ 40
1
vote
4
replies
1.8k
views
error RepeatMasker Installation
perl
updated 4.9 years ago by
Biostar
20 • written 5.1 years ago by
Chironex
▴ 40
0
votes
0
replies
608
views
tool to detect the role of transposon on genic regulation
R
transposon
4.9 years ago by
Chironex
▴ 40
3
votes
12
replies
4.9k
views
6 follow
repeatmasker species setting
genome
repeatmasker
updated 2.7 years ago by
Picasa
▴ 640 • written 4.9 years ago by
Chironex
▴ 40
1
vote
2
replies
828
views
Multiple alignements tophat
alignment
4.9 years ago by
Chironex
▴ 40
6
votes
5
replies
1.5k
views
Pirate transposable elements pipeline
transposable elements
updated 4.9 years ago by
berthelier.j
▴ 20 • written 5.0 years ago by
Chironex
▴ 40
0
votes
1
reply
4.2k
views
Transform BED file to SAF for featureCounts
featurecounts
updated 4.9 years ago by
ATpoint
82k • written 4.9 years ago by
Chironex
▴ 40
2
votes
8
replies
1.7k
views
Repetitive elements on my genome
transposon
5.0 years ago by
Chironex
▴ 40
0
votes
1
reply
926
views
repeatscout installation: problem with filter stage
software error
transposable elements
5.0 years ago by
Chironex
▴ 40
1
vote
0
replies
809
views
repeatscout: output l-mer table
transposable elements
genome
table
repeatscout
5.0 years ago by
Chironex
▴ 40
0
votes
6
replies
1.9k
views
repeatmasker empty output
genome
5.0 years ago by
Chironex
▴ 40
0
votes
1
reply
879
views
problem: Repeatscout kills
software error
updated 5.1 years ago by
ATpoint
82k • written 5.1 years ago by
Chironex
▴ 40
1
vote
11
replies
2.1k
views
random sampling genome.fa
genome
fasta
updated 5.1 years ago by
manuel.belmadani
★ 1.3k • written 5.1 years ago by
Chironex
▴ 40
1
vote
5
replies
1.5k
views
RepeatScout filtering errors
genome
software error
5.1 years ago by
Chironex
▴ 40
0
votes
4
replies
1.2k
views
problem with repeatscout allocation memory
repeatscout
transposable elements
genome
5.1 years ago by
Chironex
▴ 40
1
vote
5
replies
1.9k
views
error installation rmblast
blast
repeatmasker
updated 5.1 years ago by
ATpoint
82k • written 5.1 years ago by
Chironex
▴ 40
37 results • Page
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