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506
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Comment: Comment: BBtools specify java temp dir (or other java options)
10 months ago by FGV ▴ 170
0
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0
replies
594
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Comment: Comment: Bowtie2 - Snakemake
10 months ago by FGV ▴ 170
0
votes
3
replies
506
views
BBtools specify java temp dir (or other java options)
bbtools
updated 10 months ago by 142k • written 10 months ago by ▴ 170
2
votes
2
replies
559
views
fasterq-dump downloads two or three files from a single-end run
fasterq-dump
updated 2.1 years ago by 100k • written 2.1 years ago by ▴ 170
0
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1
reply
714
views
Comment: Comment: (WHY?) Corrupted (truncated) fq.gz files when downloaded from safari
2.1 years ago by FGV ▴ 170
0
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0
replies
1.2k
views
Answer: Answer: When to merge BAM or SAM files?
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 170
1
vote
1
reply
1.6k
views
Comment: Comment: How to limit the resources of a snakemake rule?
2.4 years ago by FGV ▴ 170
2
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1
reply
1.6k
views
Answer: Answer: How to limit the resources of a snakemake rule?
2.4 years ago by FGV ▴ 170
1
vote
0
replies
487
views
GATK GenotypeGVCFs changes HET to REF_ALT
genotypegvcfs gatk genotyping haplotypecaller joint
2.4 years ago by FGV ▴ 170
8
votes
5
replies
8.4k
views
GNU parallel command with several multiple arguments
parallel gnu parallel
updated 3.8 years ago by ★ 4.4k • written 3.8 years ago by ▴ 170
0
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0
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8.4k
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Comment: C: GNU parallel command with several multiple arguments
3.8 years ago by FGV ▴ 170
0
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1
reply
8.4k
views
Comment: C: GNU parallel command with several multiple arguments
3.8 years ago by FGV ▴ 170
0
votes
1
reply
822
views
Merge VCF INFO tags
vcf tags info
4.3 years ago by FGV ▴ 170
0
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1
reply
2.4k
views
Comment: A: filter VCF based on info field that has a key but no value
4.3 years ago by FGV ▴ 170
0
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0
replies
4.1k
views
Comment: C: Implement Bgzip Into C Program
updated 4.4 years ago by 43k • written 11.6 years ago by ▴ 170
0
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2
replies
2.7k
views
Annotate VCF on specific transcripts (ANN field)
vcf snpEff snpSift
updated 5.4 years ago by 161k • written 5.4 years ago by ▴ 170
0
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0
replies
843
views
Query UCSC Browser
ucsc api
5.8 years ago by FGV ▴ 170
0
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1
reply
1.9k
views
Answer: A: Paired-end and single-end reads combined during RNAseq - acceptable?
5.8 years ago by FGV ▴ 170
1
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0
replies
2.1k
views
Answer: A: Mapping scaffolds to chromosomes
5.8 years ago by FGV ▴ 170
0
votes
0
replies
2.5k
views
Answer: A: How can I make GATK fasta alternate reference maker faster
5.8 years ago by FGV ▴ 170
7
votes
26
replies
8.1k
views
6 follow
GNU parallel error: Command line too long
gnu parallel
5.8 years ago by FGV ▴ 170
1
vote
1
reply
8.1k
views
Answer: A: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
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1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
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1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
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0
replies
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
0
replies
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
0
replies
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
0
replies
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
1
reply
8.1k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
13
replies
2.1k
views
Assemble Amplicons from several samples
NGS Assembly next-gen sequencing
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 170
0
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0
replies
2.1k
views
Comment: C: Assemble Genome from several samples
7.0 years ago by FGV ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Assemble Genome from several samples
7.0 years ago by FGV ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Assemble Genome from several samples
7.0 years ago by FGV ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Assemble Genome from several samples
7.0 years ago by FGV ▴ 170
0
votes
2
replies
2.1k
views
Comment: C: Assemble Genome from several samples
7.0 years ago by FGV ▴ 170
3
votes
10
replies
4.1k
views
Implement Bgzip Into C Program
samtools tabix c
updated 9.9 years ago by 20 • written 11.6 years ago by ▴ 170
2
votes
9
replies
7.6k
views
Fit Mixture Of Gamma And Negative Binomial Distributions In R
r
updated 10.0 years ago by • 0 • written 12.0 years ago by ▴ 170
0
votes
1
reply
3.8k
views
Comment: C: Simulate Ngs Mapped Reads
11.2 years ago by FGV ▴ 170
6
votes
5
replies
3.8k
views
Simulate Ngs Mapped Reads
ngs simulation reads
11.2 years ago by FGV ▴ 170
1
vote
1
reply
3.8k
views
Comment: C: Simulate Ngs Mapped Reads
11.2 years ago by FGV ▴ 170
2
votes
0
replies
4.1k
views
Answer: A: Implement Bgzip Into C Program
11.6 years ago by FGV ▴ 170
0
votes
1
reply
4.1k
views
Comment: C: Implement Bgzip Into C Program
11.6 years ago by FGV ▴ 170
0
votes
1
reply
13k
views
Answer: A: How To Fix Fastq File From Sra When Fastq-Dump Split At Wrong Position
11.7 years ago by FGV ▴ 170
0
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1
reply
3.3k
views
Comment: C: Samtools Vcf Reference And Alternate Alleles
11.8 years ago by FGV ▴ 170
2
votes
3
replies
3.3k
views
Samtools Vcf Reference And Alternate Alleles
samtools vcf
updated 11.8 years ago by 14k • written 11.8 years ago by ▴ 170
2
votes
0
replies
7.7k
views
Answer: A: Filtering Out Reads Based On Base Quality With Samtools Seems Not To Work Proper
12.0 years ago by FGV ▴ 170
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