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115
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Normalizing AMR gene count data
abundance RGI
updated 15 days ago by 44k • written 15 days ago by ▴ 100
0
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1
reply
512
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Comment: Comment: Less number of total Species than Genus in 16S data
5 months ago by arshad1292 ▴ 100
2
votes
3
replies
512
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Less number of total Species than Genus in 16S data
microbiome Species Genus ASV 16S
updated 5 months ago by 8.5k • written 5 months ago by ▴ 100
0
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0
replies
395
views
NMDS plotting issue
NMDS metagenomic
11 months ago by arshad1292 ▴ 100
6
votes
3
replies
690
views
grep value from html file
cat script commandline shell grep
updated 12 months ago by 14k • written 12 months ago by ▴ 100
4
votes
3
replies
972
views
comparing two metagenomics data sets
metagenomics
updated 15 months ago by ★ 27k • written 15 months ago by ▴ 100
0
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0
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395
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How to interpret different reduced models in time series analysis with DESeq2?
time-series DESeq2
18 months ago by arshad1292 ▴ 100
0
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0
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1.3k
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Comment: Comment: Interpreting time-series analysis with DESeq2 output
18 months ago by arshad1292 ▴ 100
0
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1
reply
1.3k
views
Comment: Comment: Interpreting time-series analysis with DESeq2 output
18 months ago by arshad1292 ▴ 100
0
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0
replies
1.3k
views
Comment: Comment: Interpreting time-series analysis with DESeq2 output
18 months ago by arshad1292 ▴ 100
0
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2
replies
752
views
labelling selected genes in volcano plot
RNAseq R plot volcano
updated 18 months ago by 82k • written 18 months ago by ▴ 100
0
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2
replies
1.3k
views
Comment: Comment: Interpreting time-series analysis with DESeq2 output
18 months ago by arshad1292 ▴ 100
1
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8
replies
1.3k
views
Interpreting time-series analysis with DESeq2 output
time-series DESeq2
18 months ago by arshad1292 ▴ 100
0
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0
replies
776
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Comment: Comment: How to convert trinotate results into GFF3
18 months ago by arshad1292 ▴ 100
1
vote
2
replies
776
views
How to convert trinotate results into GFF3
gff3 gtf trinotate
18 months ago by arshad1292 ▴ 100
1
vote
1
reply
564
views
time-series analysis with DESeq2
time-series multifactorial R DESeq2
updated 18 months ago by ▴ 40 • written 18 months ago by ▴ 100
0
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2
replies
872
views
creating a list of genes in python
rnaseq python
updated 18 months ago by ▴ 100 • written 18 months ago by ▴ 100
0
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0
replies
353
views
how to set zorder for volcano plot
matplotlib python zorder volcano
19 months ago by arshad1292 ▴ 100
0
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0
replies
538
views
Comment: Comment: rename so that dot (.) is replaced with underscore (_)
19 months ago by arshad1292 ▴ 100
1
vote
2
replies
538
views
rename so that dot (.) is replaced with underscore (_)
rename linux mv
19 months ago by arshad1292 ▴ 100
0
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0
replies
521
views
Comment: Comment: creating a txt file with absolute path to each directory
20 months ago by arshad1292 ▴ 100
1
vote
2
replies
521
views
creating a txt file with absolute path to each directory
shell linux script
20 months ago by arshad1292 ▴ 100
0
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0
replies
615
views
Comment: Comment: renaming files and including folder/directory name in it
20 months ago by arshad1292 ▴ 100
0
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2
replies
615
views
renaming files and including folder/directory name in it
rename loop mv
20 months ago by arshad1292 ▴ 100
0
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0
replies
1.7k
views
Comment: Comment: problem with GTF file
20 months ago by arshad1292 ▴ 100
0
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2
replies
1.7k
views
problem with GTF file
gtf repeatmasker gff AGAT gffread
20 months ago by arshad1292 ▴ 100
0
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1
reply
1.4k
views
Comment: Comment: Confused about bin completion and contamination
23 months ago by arshad1292 ▴ 100
3
votes
3
replies
1.4k
views
Confused about bin completion and contamination
metagenomics bins metagenome
updated 23 months ago by ★ 27k • written 23 months ago by ▴ 100
0
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0
replies
780
views
Comment: Comment: Why we allow contamination during binning?
2.1 years ago by arshad1292 ▴ 100
3
votes
2
replies
780
views
Why we allow contamination during binning?
completion MAGs contamination metagenomic metagenome
2.1 years ago by arshad1292 ▴ 100
2
votes
7
replies
1.4k
views
6 follow
Finding closest genome from genbank
bacterial genome blast genbank
updated 2.2 years ago by 8.6k • written 2.2 years ago by ▴ 100
0
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0
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1.4k
views
Answer: Answer: Finding closest genome from genbank
2.2 years ago by arshad1292 ▴ 100
0
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1
reply
1.4k
views
Comment: Comment: Finding closest genome from genbank
2.2 years ago by arshad1292 ▴ 100
0
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0
replies
1.2k
views
Comment: Comment: Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
2.2 years ago by arshad1292 ▴ 100
0
votes
1
reply
1.2k
views
Comment: Comment: Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
2.3 years ago by arshad1292 ▴ 100
1
vote
5
replies
1.2k
views
Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
shotgun CD-HIT metagenome genome
2.2 years ago by arshad1292 ▴ 100
0
votes
1
reply
772
views
Redundancy analysis (RDA) for metagenomic community
bacterial RDA analysis community Redundancy metagenome
updated 2.4 years ago by ▴ 230 • written 2.4 years ago by ▴ 100
0
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6
replies
1.7k
views
ERROR [mem_sam_pe] paired reads have different names -- during binning in metaWRAP pipeline
metawrap
updated 2.5 years ago by 142k • written 2.8 years ago by ▴ 100
0
votes
0
replies
534
views
neutral community model (NCM) analysis
neutral NCM model community
2.5 years ago by arshad1292 ▴ 100
0
votes
2
replies
961
views
Comment: Comment: Error in reading tab delimited file
2.6 years ago by arshad1292 ▴ 100
1
vote
4
replies
961
views
Error in reading tab delimited file
R tab-delimited
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 100
0
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0
replies
728
views
Error in (1 - h) * qs[i] : non-numeric argument to binary operator
R moanin time-series
2.6 years ago by arshad1292 ▴ 100
2
votes
0
replies
644
views
Answer: Answer: Error while running time series analysis in R
2.6 years ago by arshad1292 ▴ 100
2
votes
1
reply
644
views
Error while running time series analysis in R
R moanin time-series
2.6 years ago by arshad1292 ▴ 100
0
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0
replies
1.4k
views
Comment: Comment: help with time series analysis
2.6 years ago by arshad1292 ▴ 100
0
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1
reply
1.4k
views
Comment: Comment: help with time series analysis
2.6 years ago by arshad1292 ▴ 100
0
votes
4
replies
1.4k
views
help with time series analysis
time-series readcount time series RNAseq
2.6 years ago by arshad1292 ▴ 100
0
votes
0
replies
579
views
RRBS methylation analysis
RRBS analyzer bismark HMST-Seq
2.6 years ago by arshad1292 ▴ 100
1
vote
2
replies
1.0k
views
how to generate .bed files for methylation (RRBS) analysis
methylation
updated 2.6 years ago by 6.4k • written 2.6 years ago by ▴ 100
0
votes
0
replies
576
views
Mapping reads and quantifying genes - Metagenomic workshop
metagenome
2.7 years ago by arshad1292 ▴ 100
71 results • Page 1 of 2
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