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cetin.m
cetin.m
Reputation:
50 (Trusted)
Joined:
8.3 years ago
Last seen:
6.5 years ago
Latest posts by user
0 votes
1 reply
1.8K views
Bcftools Mpileup bias for alternative alleles?
mpileup bcftools snp gatk
updated by Kevin Blighe 9.0K • | written by cetin.m 5
0 votes
1 reply
0 views
Comment: C: Plink --freq function
written by cetin.m 5
1 vote
5 replies
3.7K views
Plink --freq function
plink
updated by chrchang523 1.1K • | written by cetin.m 5
0 votes
1 reply
1.1K views
Can someone provide me with vcf files with X and Y chromosomes? (Human)
vcf sex chr
updated by Kevin Blighe 9.0K • | written by cetin.m 5
0 votes
0 replies
0 views
Comment: C: GATK multi sample variant calling
written by cetin.m 5
0 votes
2 replies
1.7K views
GATK multi sample variant calling
gatk snp variant calling
written by cetin.m 5
2 votes
1 reply
2.3K views
ANGSD vs GATK for genotype likelihoods
angsd gatk genotype likelihoods
written by cetin.m 5
0 votes
0 replies
1.2K views
Relatedness: Calculating k0, k1 and k2
relatedness
written by cetin.m 5
1 vote
1 reply
2.2K views
How to calculate IBD
ibd
updated by Charles Warden 829 • | written by cetin.m 5
0 votes
2 replies
1.3K views
Can't determine any relatedness using lcMLkin
lcmlkin
updated by Santosh Anand 582 • | written by cetin.m 5
0 votes
0 replies
1.1K views
IBD probablity for each Genotype pair
relatedness lcmlkin
written by cetin.m 5
0 votes
0 replies
1.1K views
Beagle permanent file
beagle imputation
written by cetin.m 5
0 votes
1 reply
0 views
Comment: C: Beagle 4.1 imputation
written by cetin.m 5
0 votes
1 reply
1.6K views
bcftools 1.4.1 call parameters
bcftools snp call
updated by finswimmer 1.6K • | written by cetin.m 5
0 votes
2 replies
0 views
Answer: A: Fst calculation between my own population and 1000 genome populations
written by cetin.m 5
0 votes
3 replies
2.8K views
Beagle 4.1 imputation
imputation
updated by Biostar 380 • | written by cetin.m 5
0 votes
1 reply
0 views
Comment: C: Choice of ref. Genomes
written by cetin.m 5
0 votes
4 replies
1.5K views
Choice of ref. Genomes
genome snp
updated by igor 1.3K • | written by cetin.m 5
0 votes
0 replies
0 views
Comment: C: Finding and changing a given position in hg19 ref fasta file
written by cetin.m 5
0 votes
5 replies
3.0K views
Finding and changing a given position in hg19 ref fasta file
hg19 fasta reference
written by cetin.m 5
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