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cetin.m
cetin.m
Reputation:
50
Joined:
8.1 years ago
Last seen:
6.2 years ago
Latest posts by user
0 votes
1 reply
1.7K views
Bcftools Mpileup bias for alternative alleles?
mpileup bcftools snp gatk
updated by Kevin Blighe Kevin Blighe • written by cetin.m cetin.m
0 votes
1 reply
0 views
Comment: C: Plink --freq function
written by cetin.m cetin.m
1 vote
5 replies
3.6K views
Plink --freq function
plink
updated by chrchang523 chrchang523 • written by cetin.m cetin.m
0 votes
1 reply
1.1K views
Can someone provide me with vcf files with X and Y chromosomes? (Human)
vcf sex chr
updated by Kevin Blighe Kevin Blighe • written by cetin.m cetin.m
0 votes
0 replies
0 views
Comment: C: GATK multi sample variant calling
written by cetin.m cetin.m
0 votes
2 replies
1.6K views
GATK multi sample variant calling
gatk snp variant calling
written by cetin.m cetin.m
2 votes
1 reply
2.2K views
ANGSD vs GATK for genotype likelihoods
angsd gatk genotype likelihoods
written by cetin.m cetin.m
0 votes
0 replies
1.1K views
Relatedness: Calculating k0, k1 and k2
relatedness
written by cetin.m cetin.m
1 vote
1 reply
2.1K views
How to calculate IBD
ibd
updated by Charles Warden Charles Warden • written by cetin.m cetin.m
0 votes
2 replies
1.3K views
Can't determine any relatedness using lcMLkin
lcmlkin
updated by Santosh Anand Santosh Anand • written by cetin.m cetin.m
0 votes
0 replies
1.1K views
IBD probablity for each Genotype pair
relatedness lcmlkin
written by cetin.m cetin.m
0 votes
0 replies
1.1K views
Beagle permanent file
beagle imputation
written by cetin.m cetin.m
0 votes
1 reply
0 views
Comment: C: Beagle 4.1 imputation
written by cetin.m cetin.m
0 votes
1 reply
1.6K views
bcftools 1.4.1 call parameters
bcftools snp call
updated by finswimmer finswimmer • written by cetin.m cetin.m
0 votes
2 replies
0 views
Answer: A: Fst calculation between my own population and 1000 genome populations
written by cetin.m cetin.m
0 votes
3 replies
2.7K views
Beagle 4.1 imputation
imputation
updated by Biostar Biostar • written by cetin.m cetin.m
0 votes
1 reply
0 views
Comment: C: Choice of ref. Genomes
written by cetin.m cetin.m
0 votes
4 replies
1.5K views
Choice of ref. Genomes
genome snp
updated by igor igor • written by cetin.m cetin.m
0 votes
0 replies
0 views
Comment: C: Finding and changing a given position in hg19 ref fasta file
written by cetin.m cetin.m
0 votes
5 replies
2.9K views
Finding and changing a given position in hg19 ref fasta file
hg19 fasta reference
written by cetin.m cetin.m
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