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0
votes
0
replies
149
views
Diffbind and DESeq2 comparison for differential sites
diffbind
deseq2
updated 26 days ago by
Ram
43k • written 4 weeks ago by
Ankit
▴ 500
0
votes
0
replies
237
views
Comment:
Comment: Why counting by diffbind and featurecounts differ?
5 weeks ago by
Ankit
▴ 500
0
votes
2
replies
237
views
Why counting by diffbind and featurecounts differ?
featurecounts
diffbind
5 weeks ago by
Ankit
▴ 500
1
vote
0
replies
382
views
Comment:
Comment: Guidance for connecting a rare phenotype to a genotype in a small family sample
3 months ago by
Ankit
▴ 500
0
votes
1
reply
382
views
Comment:
Comment: Guidance for connecting a rare phenotype to a genotype in a small family sample
3 months ago by
Ankit
▴ 500
1
vote
1
reply
1.0k
views
Comment:
Comment: sc-RNA seq pipeline
4 months ago by
Ankit
▴ 500
1
vote
0
replies
934
views
Comment:
Comment: heatmap does not look like good
4 months ago by
Ankit
▴ 500
0
votes
1
reply
934
views
Comment:
Comment: heatmap does not look like good
4 months ago by
Ankit
▴ 500
0
votes
0
replies
257
views
Metagene / Average Profile Plots background correction required or not?
chip-seq
cutandrun
IgG
updated 4 months ago by
Ram
43k • written 4 months ago by
Ankit
▴ 500
0
votes
0
replies
552
views
Answer:
Answer: Annotate list of GSMxxxx GEO sample IDs with matching source GSExxx dataset iden
4 months ago by
Ankit
▴ 500
1
vote
0
replies
658
views
Comment:
Comment: Normalization and Genome-Wide Comparisons with Chipseq
4 months ago by
Ankit
▴ 500
0
votes
0
replies
559
views
Comment:
Comment: Enrichment profiles from counts
4 months ago by
Ankit
▴ 500
1
vote
1
reply
658
views
Comment:
Comment: Normalization and Genome-Wide Comparisons with Chipseq
4 months ago by
Ankit
▴ 500
0
votes
0
replies
421
views
Comment:
Comment: .str to .bed /.bim/.fam file conversion
4 months ago by
Ankit
▴ 500
0
votes
1
reply
421
views
Comment:
Comment: .str to .bed /.bim/.fam file conversion
4 months ago by
Ankit
▴ 500
2
votes
1
reply
658
views
Comment:
Comment: Normalization and Genome-Wide Comparisons with Chipseq
4 months ago by
Ankit
▴ 500
0
votes
1
reply
559
views
Comment:
Comment: Enrichment profiles from counts
4 months ago by
Ankit
▴ 500
3
votes
1
reply
772
views
Comment:
Comment: merging replicates
4 months ago by
Ankit
▴ 500
0
votes
0
replies
850
views
Comment:
Comment: frequency plot for peaks
5 months ago by
Ankit
▴ 500
1
vote
2
replies
850
views
Comment:
Comment: frequency plot for peaks
5 months ago by
Ankit
▴ 500
0
votes
1
reply
850
views
Comment:
Comment: frequency plot for peaks
5 months ago by
Ankit
▴ 500
0
votes
0
replies
1.2k
views
Comment:
Comment: R based query about making pairwise matrix
8 months ago by
Ankit
▴ 500
0
votes
0
replies
1.2k
views
Comment:
Comment: R based query about making pairwise matrix
8 months ago by
Ankit
▴ 500
0
votes
1
reply
1.2k
views
Comment:
Comment: R based query about making pairwise matrix
8 months ago by
Ankit
▴ 500
0
votes
2
replies
1.2k
views
Comment:
Comment: R based query about making pairwise matrix
8 months ago by
Ankit
▴ 500
6
votes
10
replies
1.2k
views
Making pairwise matrix using ChIP-Seq peak binding matrix in R
R
matrix
binding
Chip-seq
8 months ago by
Ankit
▴ 500
0
votes
2
replies
726
views
Network analysis for two Factors
chip-seq
network-analysis
updated 8 months ago by
Ram
43k • written 15 months ago by
Ankit
▴ 500
0
votes
0
replies
726
views
Comment:
Comment: Network analysis for two Factors
15 months ago by
Ankit
▴ 500
0
votes
1
reply
1.4k
views
Comment:
Comment: Make large matrix data interpretable. How?
16 months ago by
Ankit
▴ 500
0
votes
1
reply
1.6k
views
Comment:
Comment: Tools / Packages to assess allele specific methylation?
16 months ago by
Ankit
▴ 500
0
votes
1
reply
1.4k
views
Comment:
Comment: Make large matrix data interpretable. How?
16 months ago by
Ankit
▴ 500
0
votes
1
reply
1.6k
views
Comment:
Comment: Tools / Packages to assess allele specific methylation?
16 months ago by
Ankit
▴ 500
3
votes
6
replies
1.6k
views
Tools / Packages to assess allele specific methylation?
SNP
Bismark
allele-specific-methylation
updated 16 months ago by
colindaven
6.4k • written 2.5 years ago by
Ankit
▴ 500
6
votes
8
replies
1.4k
views
Make large matrix data interpretable. How?
R
matrix
updated 16 months ago by
Mensur Dlakic
★ 27k • written 16 months ago by
Ankit
▴ 500
0
votes
0
replies
1.4k
views
Comment:
Comment: Make large matrix data interpretable. How?
16 months ago by
Ankit
▴ 500
1
vote
1
reply
569
views
How to determine methylation state of loci with C to T mutation?
Methylation
Mutation
DNA
updated 17 months ago by
Nana
▴ 30 • written 17 months ago by
Ankit
▴ 500
0
votes
0
replies
692
views
Comment:
Comment: How to get the genes from an identified motif using HOMER?
17 months ago by
Ankit
▴ 500
0
votes
1
reply
2.3k
views
Comment:
Comment: Tools to obtain sequence from bam file
19 months ago by
Ankit
▴ 500
0
votes
0
replies
668
views
Comment:
Comment: How to obtain GO:Slim terms for multiple GO:terms
19 months ago by
Ankit
▴ 500
1
vote
2
replies
668
views
How to obtain GO:Slim terms for multiple GO:terms
GO
GOterms
GoSlim
19 months ago by
Ankit
▴ 500
0
votes
0
replies
1.1k
views
Comment:
Comment: High Redundancy Rate in MACS2 Peak Calling for TF ChIP-Seq
19 months ago by
Ankit
▴ 500
0
votes
0
replies
770
views
Comment:
Comment: How can I make a reference genome from multiple genomes?
19 months ago by
Ankit
▴ 500
0
votes
1
reply
1.1k
views
Comment:
Comment: High Redundancy Rate in MACS2 Peak Calling for TF ChIP-Seq
19 months ago by
Ankit
▴ 500
0
votes
1
reply
2.3k
views
Comment:
Comment: Tools to obtain sequence from bam file
20 months ago by
Ankit
▴ 500
0
votes
1
reply
2.3k
views
Comment:
Comment: Tools to obtain sequence from bam file
20 months ago by
Ankit
▴ 500
5
votes
13
replies
2.3k
views
Tools to obtain sequence from bam file
sequencing
Bam
indels
updated 19 months ago by
cmdcolin
★ 3.8k • written 20 months ago by
Ankit
▴ 500
0
votes
2
replies
2.3k
views
Comment:
Comment: Tools to obtain sequence from bam file
20 months ago by
Ankit
▴ 500
0
votes
0
replies
659
views
Comment:
Comment: Genome-wide enrichment of histone marks and correlation with gene expression: Ap
21 months ago by
Ankit
▴ 500
0
votes
2
replies
659
views
Genome-wide enrichment of histone marks and correlation with gene expression: Approach/Tools?
histone
genomic
rna-seq
chip-seq
chromhmm
21 months ago by
Ankit
▴ 500
0
votes
0
replies
3.2k
views
Comment:
Comment: error while testing nextflow with --genome GRCh38
22 months ago by
Ankit
▴ 500
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